Struct ProofreadingSystem 

pub struct ProofreadingSystem {
    pub exonuclease: ExonucleaseActivity,
    pub mismatch_detector: MismatchDetector,
    pub correction_efficiency: f64,
    pub detection_threshold: f64,
}

Proofreading system for error detection and correction

Fields

exonuclease: ExonucleaseActivity

Exonuclease activity for error removal

mismatch_detector: MismatchDetector

Mismatch detector

correction_efficiency: f64

Error correction efficiency

detection_threshold: f64

Detection threshold

Implementations

impl ProofreadingSystem

pub fn new() -> Self

Create new proofreading system

pub fn should_proofread(&self, position: usize) -> bool

Check if proofreading should be performed at this position

pub fn check_and_correct( &self, synthesized: &NucleotideData, template: &NucleotideData, ) -> OxirsResult<Option<NucleotideData>>

Check for errors and correct if found

pub fn correction_count(&self) -> u64

Get correction count (simulation)

Trait Implementations

impl Clone for ProofreadingSystem

fn clone(&self) -> ProofreadingSystem

Returns a duplicate of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Debug for ProofreadingSystem

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl Default for ProofreadingSystem

fn default() -> Self

Returns the “default value” for a type.

impl<'de> Deserialize<'de> for ProofreadingSystem

fn deserialize<__D>(__deserializer: __D) -> Result<Self, __D::Error>

where __D: Deserializer<'de>,

Deserialize this value from the given Serde deserializer.

impl Serialize for ProofreadingSystem

fn serialize<__S>(&self, __serializer: __S) -> Result<__S::Ok, __S::Error>

where __S: Serializer,

Serialize this value into the given Serde serializer.