Struct DnaDataStructure 

pub struct DnaDataStructure {
    pub primary_strand: Vec<NucleotideData>,
    pub complementary_strand: Vec<NucleotideData>,
    pub genetic_markers: HashMap<String, usize>,
    pub chromosomes: Vec<ChromosomeSegment>,
    pub replication_machinery: ReplicationMachinery,
}

DNA-inspired data structure for RDF storage

Fields

primary_strand: Vec<NucleotideData>

Primary DNA strand (main data)

complementary_strand: Vec<NucleotideData>

Complementary strand (redundancy/validation)

genetic_markers: HashMap<String, usize>

Genetic markers for indexing

chromosomes: Vec<ChromosomeSegment>

Chromosome segments for partitioning

replication_machinery: ReplicationMachinery

Replication machinery

Implementations

impl DnaDataStructure

pub fn new() -> Self

Create a new DNA-inspired data structure

pub fn encode_triple(&mut self, triple: &Triple) -> OxirsResult<()>

Encode a triple into nucleotide sequence

pub fn decode_triples(&self) -> OxirsResult<Vec<Triple>>

Decode nucleotide sequence back to triples

pub fn add_genetic_marker(&mut self, name: String, position: usize)

Add genetic marker for indexing

pub fn find_by_marker(&self, marker: &str) -> Option<usize>

Find position by genetic marker

pub fn validate_integrity(&self) -> bool

Validate strand integrity

pub fn length(&self) -> usize

Get strand length

pub fn memory_usage(&self) -> usize

Get memory usage estimate

Trait Implementations

impl Clone for DnaDataStructure

fn clone(&self) -> DnaDataStructure

Returns a duplicate of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Debug for DnaDataStructure

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl Default for DnaDataStructure

fn default() -> Self

Returns the “default value” for a type.

impl<'de> Deserialize<'de> for DnaDataStructure

fn deserialize<__D>(__deserializer: __D) -> Result<Self, __D::Error>

where __D: Deserializer<'de>,

Deserialize this value from the given Serde deserializer.

impl Serialize for DnaDataStructure

fn serialize<__S>(&self, __serializer: __S) -> Result<__S::Ok, __S::Error>

where __S: Serializer,

Serialize this value into the given Serde serializer.