Struct RNAMFEFolder 

pub struct RNAMFEFolder {
    pub unpaired_penalty: f64,
    pub pair_bonus: f64,
}

An RNA secondary structure folder using the Nussinov maximum base-pair algorithm as a proxy for minimum free energy (MFE) folding.

Fields

unpaired_penalty: f64

Penalty per unpaired base (negative = energetically unfavourable).

pair_bonus: f64

Energy bonus per base pair.

Implementations

impl RNAMFEFolder

pub fn new() -> Self

Create an RNAMFEFolder with default Turner-like parameters.

pub fn with_params(pair_bonus: f64, unpaired_penalty: f64) -> Self

Create an RNAMFEFolder with custom parameters.

pub fn fold(&self, sequence: &str) -> (f64, Vec<BasePair>)

Fold an RNA sequence; returns (approximate MFE, base-pair list).

pub fn mfe(&self, sequence: &str) -> f64

Return only the MFE estimate.

Trait Implementations

impl Clone for RNAMFEFolder

fn clone(&self) -> RNAMFEFolder

Returns a duplicate of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Debug for RNAMFEFolder

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl Default for RNAMFEFolder

fn default() -> Self

Returns the “default value” for a type.