Enum OutputFormat 

pub enum OutputFormat {
    Genbank,
    Gca,
    Sco,
    Gff,
}

Output format options for gene prediction results.

Orphos supports multiple output formats for compatibility with different downstream analysis tools.

Formats

• GenBank: Feature-rich annotation format with gene sequences
• GFF: General Feature Format version 3 (widely supported)
• GCA: Gene coordinate annotation (simple tabular format)
• SCO: Simple coordinate output (minimal format)

Examples

use orphos_core::config::{OutputFormat, OrphosConfig};

let config = OrphosConfig {
    output_format: OutputFormat::Gff,
    ..Default::default()
};

Variants

Genbank

GenBank format output with full feature annotations and sequences.

Includes gene coordinates, translation, product names, and sequence data. Compatible with NCBI submission tools.

Gca

Gene coordinate annotation format.

Tab-delimited format with gene coordinates and basic metadata. Lightweight and easy to parse.

Sco

Simple coordinate output format.

Minimal format with just start/stop positions and strand. Useful for quick gene counting or position extraction.

Gff

General Feature Format version 3.

Standard genome annotation format supported by most bioinformatics tools. Includes gene coordinates, scores, and attributes.

Trait Implementations

impl Clone for OutputFormat

fn clone(&self) -> OutputFormat

Returns a duplicate of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Debug for OutputFormat

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl PartialEq for OutputFormat

fn eq(&self, other: &OutputFormat) -> bool

Tests for self and other values to be equal, and is used by ==.

fn ne(&self, other: &Rhs) -> bool

Tests for !=. The default implementation is almost always sufficient, and should not be overridden without very good reason.

impl Copy for OutputFormat

impl Eq for OutputFormat

impl StructuralPartialEq for OutputFormat