Enum Amino 

#[repr(u8)]
pub enum Amino {
    Stop = 42,
    A = 65,
    C = 67,
    D = 68,
    E = 69,
    F = 70,
    G = 71,
    H = 72,
    I = 73,
    K = 75,
    L = 76,
    M = 77,
    N = 78,
    O = 79,
    P = 80,
    Q = 81,
    R = 82,
    S = 83,
    T = 84,
    U = 85,
    V = 86,
    W = 87,
    Y = 89,
}

Amino acid

For details, see: https://en.wikipedia.org/wiki/FASTA_format#Sequence_representation

Aminos are ordered by the value of their ASCII representation.

Variants

Stop = 42

Translation stop

A = 65

Alanine

C = 67

Cysteine

D = 68

Aspartic acid

E = 69

Glutamic acid

F = 70

Phenylalanine

G = 71

Glycine

H = 72

Histidine

I = 73

Isoleucine

K = 75

Lysine

L = 76

Leucine

M = 77

Methionine

N = 78

Asparagine

O = 79

Pyrrolysine

P = 80

Proline,

Q = 81

Glutamine

R = 82

Arginine

S = 83

Serine

T = 84

Threonine

U = 85

Selenocysteine

V = 86

Valine

W = 87

Tryptophan

Y = 89

Tyrosine

Implementations

impl Amino

pub const ALL: [Self; 23]

All Aminos sorted in ascending order

pub fn to_str(self) -> &'static str

Return uppercase string representation

Examples

use nucs::Amino;

assert_eq!(Amino::A.to_str(), "A");
assert_eq!(Amino::Stop.to_str(), "*");

pub const fn from_ascii(ascii: u8) -> Result<Self, ParseSymbolError>

Construct from ASCII representation

Errors

Returns ParseSymbolError if the given byte isn’t A, C, D, E, F, G, H, I, K, L, M, N, O, P, Q, R, S, T, U, V, W, Y or * (case-insensitive).

Examples

use nucs::Amino;

assert_eq!(Amino::from_ascii(b'A'), Ok(Amino::A));
assert_eq!(Amino::from_ascii(b'*'), Ok(Amino::Stop));
assert!(Amino::from_ascii(b'B').is_err());

pub fn to_ascii(self) -> u8

Return uppercase ASCII representation

Examples

use nucs::Amino;

assert_eq!(Amino::A.to_ascii(), b'A');
assert_eq!(Amino::Stop.to_ascii(), b'*');

pub const fn lit<const N: usize>(literal: &[u8; N]) -> [Amino; N]

Construct Amino array from literal without allocating.

Examples

use nucs::Amino;

let aas1 = Amino::lit(b"ACME*WIDGETS");
// ...is shorthand for...
use Amino::{A, C, M, E, Stop, W, I, D, G, T, S};
let aas2 = [A, C, M, E, Stop, W, I, D, G, E, T, S];

assert_eq!(aas1, aas2);

Panics

This panics if the supplied literal isn’t valid. Whitespace is NOT allowed because the returned array must have the same length.

Trait Implementations

impl AsMut<Amino> for Amino

fn as_mut(&mut self) -> &mut Amino

Converts this type into a mutable reference of the (usually inferred) input type.

impl AsRef<Amino> for Amino

fn as_ref(&self) -> &Amino

Converts this type into a shared reference of the (usually inferred) input type.

impl BitOr<&AmbiAmino> for &Amino

type Output = AmbiAmino

The resulting type after applying the | operator.

fn bitor(self, rhs: &AmbiAmino) -> Self::Output

Performs the | operation.

impl BitOr<&Amino> for &AmbiAmino

type Output = AmbiAmino

The resulting type after applying the | operator.

fn bitor(self, rhs: &Amino) -> Self::Output

Performs the | operation.

impl BitOr<AmbiAmino> for Amino

type Output = AmbiAmino

The resulting type after applying the | operator.

fn bitor(self, rhs: AmbiAmino) -> Self::Output

Performs the | operation.

impl BitOr<Amino> for AmbiAmino

type Output = AmbiAmino

The resulting type after applying the | operator.

fn bitor(self, rhs: Amino) -> Self::Output

Performs the | operation.

impl BitOr for &Amino

type Output = AmbiAmino

The resulting type after applying the | operator.

fn bitor(self, rhs: &Amino) -> Self::Output

Performs the | operation.

impl BitOr for Amino

type Output = AmbiAmino

The resulting type after applying the | operator.

fn bitor(self, rhs: Amino) -> Self::Output

Performs the | operation.

impl BitOrAssign<&Amino> for AmbiAmino

fn bitor_assign(&mut self, rhs: &Amino)

Performs the |= operation.

impl BitOrAssign<Amino> for AmbiAmino

fn bitor_assign(&mut self, rhs: Amino)

Performs the |= operation.

impl Clone for Amino

fn clone(&self) -> Amino

Returns a duplicate of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Debug for Amino

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl Display for Amino

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl From<Amino> for AmbiAmino

fn from(amino: Amino) -> Self

Converts to this type from the input type.

impl FromStr for Amino

type Err = ParseSymbolError

The associated error which can be returned from parsing.

fn from_str(s: &str) -> Result<Self, Self::Err>

Parses a string s to return a value of this type.

impl Hash for Amino

fn hash<__H: Hasher>(&self, state: &mut __H)

Feeds this value into the given Hasher.

fn hash_slice<H>(data: &[Self], state: &mut H)

where H: Hasher, Self: Sized,

Feeds a slice of this type into the given Hasher.

impl Ord for Amino

fn cmp(&self, other: &Amino) -> Ordering

This method returns an Ordering between self and other.

fn max(self, other: Self) -> Self

where Self: Sized,

Compares and returns the maximum of two values.

fn min(self, other: Self) -> Self

where Self: Sized,

Compares and returns the minimum of two values.

fn clamp(self, min: Self, max: Self) -> Self

where Self: Sized,

Restrict a value to a certain interval.

impl PartialEq<AmbiAmino> for Amino

fn eq(&self, other: &AmbiAmino) -> bool

Tests for self and other values to be equal, and is used by ==.

fn ne(&self, other: &Rhs) -> bool

Tests for !=. The default implementation is almost always sufficient, and should not be overridden without very good reason.

impl PartialEq<Amino> for AmbiAmino

fn eq(&self, other: &Amino) -> bool

Tests for self and other values to be equal, and is used by ==.

fn ne(&self, other: &Rhs) -> bool

Tests for !=. The default implementation is almost always sufficient, and should not be overridden without very good reason.

impl PartialEq for Amino

fn eq(&self, other: &Amino) -> bool

Tests for self and other values to be equal, and is used by ==.

fn ne(&self, other: &Rhs) -> bool

Tests for !=. The default implementation is almost always sufficient, and should not be overridden without very good reason.

impl PartialOrd<AmbiAmino> for Amino

fn partial_cmp(&self, other: &AmbiAmino) -> Option<Ordering>

This method returns an ordering between self and other values if one exists.

fn lt(&self, other: &Rhs) -> bool

Tests less than (for self and other) and is used by the < operator.

fn le(&self, other: &Rhs) -> bool

Tests less than or equal to (for self and other) and is used by the <= operator.

fn gt(&self, other: &Rhs) -> bool

Tests greater than (for self and other) and is used by the > operator.

fn ge(&self, other: &Rhs) -> bool

Tests greater than or equal to (for self and other) and is used by the >= operator.

impl PartialOrd<Amino> for AmbiAmino

fn partial_cmp(&self, other: &Amino) -> Option<Ordering>

This method returns an ordering between self and other values if one exists.

fn lt(&self, other: &Rhs) -> bool

Tests less than (for self and other) and is used by the < operator.

fn le(&self, other: &Rhs) -> bool

Tests less than or equal to (for self and other) and is used by the <= operator.

fn gt(&self, other: &Rhs) -> bool

Tests greater than (for self and other) and is used by the > operator.

fn ge(&self, other: &Rhs) -> bool

Tests greater than or equal to (for self and other) and is used by the >= operator.

impl PartialOrd for Amino

fn partial_cmp(&self, other: &Amino) -> Option<Ordering>

This method returns an ordering between self and other values if one exists.

fn lt(&self, other: &Rhs) -> bool

Tests less than (for self and other) and is used by the < operator.

fn le(&self, other: &Rhs) -> bool

Tests less than or equal to (for self and other) and is used by the <= operator.

fn gt(&self, other: &Rhs) -> bool

Tests greater than (for self and other) and is used by the > operator.

fn ge(&self, other: &Rhs) -> bool

Tests greater than or equal to (for self and other) and is used by the >= operator.

impl Symbol for Amino

type Concrete = Amino

Concrete symbols, i.e. Nuc or Amino

type Ambiguous = AmbiAmino

Ambiguous symbols, i.e. AmbiNuc or AmbiAmino

fn to_str(self) -> &'static str

Return uppercase string representation

fn from_ascii(ascii: u8) -> Result<Self, ParseSymbolError>

Construct from (case-insensitive) ASCII representation

fn to_ascii(self) -> u8

Return uppercase ASCII representation

fn lit<const N: usize>(literal: &[u8; N]) -> [Self; N]

Construct array from literal without allocating.

impl TryFrom<AmbiAmino> for Amino

type Error = AmbiAmino

The type returned in the event of a conversion error.

fn try_from(amino: AmbiAmino) -> Result<Self, Self::Error>

Performs the conversion.

impl Copy for Amino

impl Eq for Amino

impl StructuralPartialEq for Amino