Crate noodles_gff
source ·Expand description
noodles-gff handles the reading and writing of the GFF3 format.
GFF (Generic Feature Format) is a text-based format used to represent genomic features.
Examples
Read all records in a GFF3 file
use noodles_gff as gff;
let mut reader = File::open("annotations.gff3")
.map(BufReader::new)
.map(gff::Reader::new)?;
for result in reader.records() {
let record = result?;
println!(
"{}\t{}\t{}",
record.reference_sequence_name(),
record.start(),
record.end(),
);
}
Re-exports
pub use self::directive::Directive;
pub use self::line::Line;
pub use self::reader::Reader;
pub use self::record::Record;
Modules
- GFF directives.
- GFF lines.
- GFF reader and iterators.
- GFF record and fields.
Structs
- A GFF writer.