ngs::utils::formats

Enum BioinformaticsFileFormat

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pub enum BioinformaticsFileFormat {

Show 17 variants    FASTA,
    FASTA_GZ,
    FASTQ,
    FASTQ_GZ,
    SAM,
    UBAM,
    BAM,
    CRAM,
    VCF,
    VCF_GZ,
    BCF,
    GFF,
    GFF_GZ,
    GFF_BGZ,
    GTF,
    GTF_GZ,
    BED,

}
Expand description

Represents all of the supported bioinformatics file formats that can be detected by the extension of the filename.

Variants§

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FASTA

A FASTA file.

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FASTA_GZ

A Gzipped FASTA file.

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FASTQ

A FASTQ file.

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FASTQ_GZ

A Gzipped FASTQ file.

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SAM

A SAM file.

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UBAM

An unaligned BAM file.

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BAM

A BAM file.

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CRAM

A CRAM file.

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VCF

A VCF file.

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VCF_GZ

A Gzipped VCF file.

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BCF

A BCF file.

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GFF

A GFF file.

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GFF_GZ

A Gzipped GFF file.

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GFF_BGZ

A block-gzipped GFF file.

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GTF

A GTF file.

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GTF_GZ

A Gzipped GTF file.

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BED

A BED file.

Implementations§

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impl BioinformaticsFileFormat

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pub fn try_detect( filepath: impl Into<PathBuf>, ) -> Option<BioinformaticsFileFormat>

Tries to detect a bioinformatics file format from the extension of the provided filepath.

Trait Implementations§

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impl Debug for BioinformaticsFileFormat

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fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter. Read more
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impl Display for BioinformaticsFileFormat

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fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter. Read more
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impl PartialEq for BioinformaticsFileFormat

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fn eq(&self, other: &BioinformaticsFileFormat) -> bool

Tests for self and other values to be equal, and is used by ==.
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fn ne(&self, other: &Rhs) -> bool

Tests for !=. The default implementation is almost always sufficient, and should not be overridden without very good reason.
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impl Eq for BioinformaticsFileFormat

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impl StructuralPartialEq for BioinformaticsFileFormat

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