Enum SplicedExonChunk 

pub enum SplicedExonChunk {
    Match(u64),
    Mismatch(u64),
    Diag(u64),
    ProductIns(u64),
    GenomicIns(u64),
}

Piece of an exon

Each variant contains lengths given in nucleotide bases (1/3 of amino acid when product is a protein)

Variants

Match(u64)

both sequences represented, product and genomic sequences match

Mismatch(u64)

both sequences represented, product and genomic sequences do not match

Diag(u64)

both sequences are represented, there is sufficient similarity between product and genomic sequences. Can be used to replace stretches of matches and mismatches, mostly for protein to genomic where definition of match or mismatch depends on translation table

ProductIns(u64)

Insertion in product sequence (ie: gap in the genomic sequence)

GenomicIns(u64)

Insertion in product sequence (ie: gap in the genomic sequence)

Trait Implementations

impl Clone for SplicedExonChunk

fn clone(&self) -> Self

Returns a duplicate of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Debug for SplicedExonChunk

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl<'de> Deserialize<'de> for SplicedExonChunk

fn deserialize<__D>(__deserializer: __D) -> Result<Self, __D::Error>

where __D: Deserializer<'de>,

Deserialize this value from the given Serde deserializer.

impl PartialEq for SplicedExonChunk

fn eq(&self, other: &Self) -> bool

Equality operator ==.

fn ne(&self, other: &Rhs) -> bool

Inequality operator !=.

impl Serialize for SplicedExonChunk

fn serialize<__S>(&self, __serializer: __S) -> Result<__S::Ok, __S::Error>

where __S: Serializer,

Serialize this value into the given Serde serializer.

impl StructuralPartialEq for SplicedExonChunk