Struct ModConfigBuilder 

pub struct ModConfigBuilder { /* private fields */ }

Builder for ModConfig.

Implementations

impl ModConfigBuilder

pub fn base(self, value: char) -> Self

Base that is modified (A, C, G, T, or N)

pub fn is_strand_plus(self, value: bool) -> Self

Whether this is on the plus strand

pub fn mod_code(self, value: String) -> Self

Modification code (character or numeric)

pub fn win(self, value: Vec<u32>) -> Self

Vector of window sizes for modification density variation. e.g. if you want reads with a window of 100 bases with each modified with a probability in the range 0.4-0.6 and the next 200 modified in the range 0.1-0.2 (and this two window config repeating forever), you need to set this win array to [100, 200] and the mod range array to [[0.4, 0.6], [0.1, 0.2]] (Remembering to adjust the datatypes of the inputs suitably i.e. use NonZeroU32 etc.) NOTE: “bases” in the above description refer to bases of interest set in the base field i.e. 100 bases with base set to “T” mean 100 thymidines specifically.

pub fn mod_range(self, value: Vec<(f32, f32)>) -> Self

Vector of modification density range e.g. [[0.4, 0.6], [0.1, 0.2]]. Also see description of win above.

pub fn build(self) -> Result<ModConfig, Error>

Builds a new ModConfig.

Errors

If a required field has not been initialized.

Trait Implementations

impl Clone for ModConfigBuilder

fn clone(&self) -> ModConfigBuilder

Returns a duplicate of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Default for ModConfigBuilder

fn default() -> Self

Returns the “default value” for a type.