Skip to main content

InputModOptions

nanalogue_core::cli

Trait InputModOptions 

Source 
pub trait InputModOptions {
    // Required methods
    fn tag(&self) -> Option<ModChar>;
    fn mod_strand(&self) -> Option<RestrictModCalledStrand>;
    fn mod_prob_filter(&self) -> ThresholdState;
    fn trim_read_ends_mod(&self) -> usize;
    fn base_qual_filter_mod(&self) -> u8;
}
Expand description

Retrieves options for modification input

Required Methods§

Source

fn tag(&self) -> Option<ModChar>

retrieves tag

Source

fn mod_strand(&self) -> Option<RestrictModCalledStrand>

retrieves option to set basecalled strand or opposite in mod retrieval

Source

fn mod_prob_filter(&self) -> ThresholdState

returns probability filter

Source

fn trim_read_ends_mod(&self) -> usize

returns read end trimming

Source

fn base_qual_filter_mod(&self) -> u8

returns threshold for filtering base PHRED quality

Implementors§