Enum MassSpectrometerFileFormatTerm 

pub enum MassSpectrometerFileFormatTerm {
    WatersRaw,
    MassSpectrometerFile,
    ABIWIFF,
    ThermoRAW,
    PSIMzData,
    MicromassPKL,
    ISBMzXML,
    BrukerAgilentYEP,
    MzML,
    DTA,
    ProteinLynxGlobalServerMassSpectrumXML,
    ParameterFile,
    BioworksSRF,
    BrukerBAF,
    BrukerU2,
    BrukerFID,
    ShimadzuBiotechDatabaseEntity,
    MascotMGF,
    MobilionMBI,
    PerSeptivePKS,
    SCIEXAPIIII,
    BrukerXML,
    Text,
    PhenyxXML,
    MS2,
    SCIEXTOFTOFDatabase,
    AgilentMassHunter,
    ProteinscapeSpectra,
    SCIEXTOFTOFT2D,
    Mz5,
    BrukerContainer,
    SCiLSLab,
    AndiMS,
    UIMF,
    MS1,
    BrukerTDF,
    MzMLb,
    Msalign,
    Feature,
    Chrom,
    AndromedaAplFile,
    ShimadzuBiotechLCD,
    BrukerTSF,
    OpenChromatographyBinaryOCB,
    SCIEXWIFF2,
    MzPeak,
    ImzML,
}

Variants

WatersRaw

Waters raw format - Waters data file format found in a Waters RAW directory, generated from an MS acquisition.

MassSpectrometerFile

mass spectrometer file format - The format of the file being used. This could be a instrument or vendor specific proprietary file format or a converted open file format.

ABIWIFF

ABI WIFF format - Applied Biosystems WIFF file format.

ThermoRAW

Thermo RAW format - Thermo Scientific RAW file format.

PSIMzData

PSI mzData format - Proteomics Standards Initiative mzData file format.

MicromassPKL

Micromass PKL format - Micromass PKL file format.

ISBMzXML

ISB mzXML format - Institute of Systems Biology mzXML file format.

BrukerAgilentYEP

Bruker/Agilent YEP format - Bruker/Agilent YEP file format.

MzML

mzML format - Proteomics Standards Initiative mzML file format.

DTA

DTA format - SEQUEST DTA file format.

ProteinLynxGlobalServerMassSpectrumXML

ProteinLynx Global Server mass spectrum XML format - Peak list file format used by ProteinLynx Global Server.

ParameterFile

parameter file - Parameter file used to configure the acquisition of raw data on the instrument.

BioworksSRF

Bioworks SRF format - Thermo Finnigan SRF file format.

BrukerBAF

Bruker BAF format - Bruker BAF raw file format.

BrukerU2

Bruker U2 format - Bruker HyStar U2 file format.

BrukerFID

Bruker FID format - Bruker FID file format.

ShimadzuBiotechDatabaseEntity

Shimadzu Biotech database entity - Shimadzu Biotech format.

MascotMGF

Mascot MGF format - Mascot MGF file format.

MobilionMBI

Mobilion MBI format - Mobilion MBI file format.

PerSeptivePKS

PerSeptive PKS format - PerSeptive peak list file format.

SCIEXAPIIII

SCIEX API III format - PE SCIEX peak list file format.

BrukerXML

Bruker XML format - Bruker data exchange XML format.

Text

text format - Simple text file format of ‘m/z [intensity]’ values for a PMF (or single MS2) search.

PhenyxXML

Phenyx XML format - Phenyx open XML file format.

MS2

MS2 format - MS2 file format for MS2 spectral data.

SCIEXTOFTOFDatabase

SCIEX TOF/TOF database - Applied Biosystems/MDS Analytical Technologies TOF/TOF instrument database.

AgilentMassHunter

Agilent MassHunter format - A data file format found in an Agilent MassHunter directory which contains raw data acquired by an Agilent mass spectrometer.

ProteinscapeSpectra

Proteinscape spectra - Spectra from Bruker/Protagen Proteinscape database.

SCIEXTOFTOFT2D

SCIEX TOF/TOF T2D format - Applied Biosystems/MDS Analytical Technologies TOF/TOF instrument export format.

Mz5

mz5 format - mz5 file format, modelled after mzML.

BrukerContainer

Bruker Container format - Bruker Container raw file format.

SCiLSLab

SCiLS Lab format - SCiLS Lab file format.

AndiMS

Andi-MS format - AIA Analytical Data Interchange file format for mass spectrometry data.

UIMF

UIMF format - SQLite-based file format created at Pacific Northwest National Lab. It stores an intermediate analysis of ion-mobility mass spectrometry data.

MS1

MS1 format - MS1 file format for MS1 spectral data.

BrukerTDF

Bruker TDF format - Bruker TDF raw file format.

MzMLb

mzMLb format - mzMLb file format, mzML encapsulated within HDF5.

Msalign

msalign format - msalign file format.

Feature

feature format - TopFD feature file format.

Chrom

chrom format - The Lipid Data Analyzer native chrom format.

AndromedaAplFile

Andromeda:apl file format - Peak list file format of the Andromeda search engine.

ShimadzuBiotechLCD

Shimadzu Biotech LCD format - Shimadzu Biotech LCD file format.

BrukerTSF

Bruker TSF format - Bruker TSF raw file format.

OpenChromatographyBinaryOCB

Open Chromatography Binary OCB format - ChemClipse/OpenChrom file format.

SCIEXWIFF2

SCIEX WIFF2 format - SCIEX WIFF2 file format.

MzPeak

mzPeak format - Proteomics Standards Initiatve mzPeak file format.

ImzML

imzML format - IMSIS imzML imaging file format.

Implementations

impl MassSpectrometerFileFormatTerm

These methods are part of the controlled vocabulary mapping

pub const fn accession(&self) -> u32

Retrieve the accession number for this term, independent of its controlled vocabulary

pub const fn controlled_vocabulary(&self) -> ControlledVocabulary

Retrieve the controlled vocabulary this term belongs to

pub const fn name(&self) -> &'static str

Retrieve the plain text human readable name for this term

pub fn from_name(name: &str) -> Option<MassSpectrometerFileFormatTerm>

Attempt to map a string by name to retrieve one of the terms from this set.

If no match is found, None is returned.

pub const fn from_accession( accession: u32, ) -> Option<MassSpectrometerFileFormatTerm>

Attempt to map the numeric accession number to retrieve one of the terms from this set.

If no match is found, None is returned.

pub const fn to_param(self) -> ParamCow<'static>

Convert this term into a ParamCow without a value.

pub const fn from_curie(curie: &CURIE) -> Option<MassSpectrometerFileFormatTerm>

Convert a CURIE by accession.

If no match is found, None is returned.

pub const fn from_param( p: &ParamCow<'static>, ) -> Option<MassSpectrometerFileFormatTerm>

Attempt to convert a ParamCow to a term from this set.

If no match is found, None is returned.

Note

This method can be called in const contexts, requiring the type be ParamCow with a 'static lifetime parameter, but the regular From trait is implemented for all ParamLike types.

pub fn flags(&self) -> i32

Retrieve a term set specific set of flags

pub fn parents(&self) -> Vec<MassSpectrometerFileFormatTerm>

Retrieve the list of zero or more terms in the set which are parents of this term.

Trait Implementations

impl Clone for MassSpectrometerFileFormatTerm

fn clone(&self) -> MassSpectrometerFileFormatTerm

Returns a duplicate of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Debug for MassSpectrometerFileFormatTerm

fn fmt(&self, f: &mut Formatter<'_>) -> Result<(), Error>

Formats the value using the given formatter.

impl From<&MassSpectrometerFileFormatTerm> for Param

fn from(value: &MassSpectrometerFileFormatTerm) -> Param

Converts to this type from the input type.

impl From<&MassSpectrometerFileFormatTerm> for ParamCow<'static>

fn from(value: &MassSpectrometerFileFormatTerm) -> ParamCow<'static>

Converts to this type from the input type.

impl From<MassSpectrometerFileFormatTerm> for Param

fn from(value: MassSpectrometerFileFormatTerm) -> Param

Converts to this type from the input type.

impl From<MassSpectrometerFileFormatTerm> for ParamCow<'static>

fn from(value: MassSpectrometerFileFormatTerm) -> ParamCow<'static>

Converts to this type from the input type.

impl<P> From<P> for MassSpectrometerFileFormatTerm

where P: ParamLike,

fn from(value: P) -> MassSpectrometerFileFormatTerm

Converts to this type from the input type.

impl PartialEq for MassSpectrometerFileFormatTerm

fn eq(&self, other: &MassSpectrometerFileFormatTerm) -> bool

Tests for self and other values to be equal, and is used by ==.

fn ne(&self, other: &Rhs) -> bool

Tests for !=. The default implementation is almost always sufficient, and should not be overridden without very good reason.

impl Copy for MassSpectrometerFileFormatTerm

impl Eq for MassSpectrometerFileFormatTerm

impl StructuralPartialEq for MassSpectrometerFileFormatTerm