Struct SourceFile 

pub struct SourceFile {
    pub name: String,
    pub location: String,
    pub id: String,
    pub file_format: Option<Param>,
    pub id_format: Option<Param>,
    pub params: ParamList,
}

Description of a source file, including location and type.

This is usually another mass spectrometry data file. For some vendor raw formats that are directories, there can be many files. See https://peptideatlas.org/tmp/mzML1.1.0.html#sourceFile.

Fields

name: String

The name of the source file without any path or location information

location: String

The URI-formatted location where the file was retrieved.

id: String

A unique identifier for this source file

file_format: Option<Param>

The MassSpectrometerFileFormatTerm-defined parameter for this file

id_format: Option<Param>

The NativeSpectrumIdentifierFormatTerm-defined parameter for this file

params: ParamList

The rest of the parameters for this file.

Implementations

impl SourceFile

pub fn native_id_format(&self) -> Option<NativeSpectrumIDFormat>

Convert SourceFile::id_format into a NativeSpectrumIDFormat carrying its own parser machinery, if such a term mapping exists

Trait Implementations

impl Clone for SourceFile

fn clone(&self) -> SourceFile

Returns a duplicate of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Debug for SourceFile

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl Default for SourceFile

fn default() -> SourceFile

Returns the “default value” for a type.

impl Eq for SourceFile

impl ParamDescribed for SourceFile

fn params(&self) -> &[Param]

Obtain an immutable slice over the encapsulated Param list

fn params_mut(&mut self) -> &mut ParamList

Obtain an mutable slice over the encapsulated Param list

fn add_param(&mut self, param: Param)

Add a new Param to the entity

fn extend_params(&mut self, it: impl IntoIterator<Item = Param>)

Add all parameters from an iterator of Param to the entity

fn remove_param(&mut self, index: usize) -> Param

Remove the ith Param from the entity.

fn get_param_by_name(&self, name: &str) -> Option<&Param>

Find the first Param whose name matches name

fn get_param_by_curie(&self, curie: &CURIE) -> Option<&Param>

Find the first Param whose CURIE matches curie

fn get_param_by_accession(&self, accession: &str) -> Option<&Param>

Find the first Param whose Param::accession matches accession

fn iter_params(&self) -> Iter<'_, Param>

Iterate over the encapsulated parameter list

fn iter_params_mut(&mut self) -> IterMut<'_, Param>

Iterate mutably over the encapsulated parameter list

impl PartialEq for SourceFile

fn eq(&self, other: &SourceFile) -> bool

Equality operator ==.

fn ne(&self, other: &Rhs) -> bool

Inequality operator !=.

impl StructuralPartialEq for SourceFile