Struct Stats 

pub struct Stats {
    pub identical: usize,
    pub mass_similar: usize,
    pub similar: usize,
    pub gaps: usize,
    pub length: usize,
}

Statistics for an alignment with some helper functions to easily retrieve the number of interest.

Fields

identical: usize

The total number of identical positions

mass_similar: usize

The total number of mass similar positions, so including isobaric and rotations

similar: usize

The total number of similar positions, where the scoring matrix scores above 0, and not isobaric

gaps: usize

The total number of gap positions

length: usize

The length of the alignment, the sum of the max of the step for A and B for each position.

Implementations

impl Stats

pub fn identity(self) -> f64

Get the identity as fraction.

pub fn mass_similarity(self) -> f64

Get the mass similarity as fraction.

pub fn similarity(self) -> f64

Get the similarity as fraction.

pub fn gaps_fraction(self) -> f64

Get the gaps as fraction.

Trait Implementations

impl Clone for Stats

fn clone(&self) -> Stats

Returns a duplicate of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Debug for Stats

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl<'de> Deserialize<'de> for Stats

fn deserialize<__D>(__deserializer: __D) -> Result<Self, __D::Error>

where __D: Deserializer<'de>,

Deserialize this value from the given Serde deserializer.

impl Hash for Stats

fn hash<__H: Hasher>(&self, state: &mut __H)

Feeds this value into the given Hasher.

fn hash_slice<H>(data: &[Self], state: &mut H)

where H: Hasher, Self: Sized,

Feeds a slice of this type into the given Hasher.

impl PartialEq for Stats

fn eq(&self, other: &Stats) -> bool

Tests for self and other values to be equal, and is used by ==.

fn ne(&self, other: &Rhs) -> bool

Tests for !=. The default implementation is almost always sufficient, and should not be overridden without very good reason.

impl Serialize for Stats

fn serialize<__S>(&self, __serializer: __S) -> Result<__S::Ok, __S::Error>

where __S: Serializer,

Serialize this value into the given Serde serializer.

impl Copy for Stats

impl Eq for Stats

impl StructuralPartialEq for Stats