Struct ConsecutiveAlignment 

pub struct ConsecutiveAlignment<'lifetime, A> {
    pub alignments: Vec<Vec<(Allele<'lifetime>, Alignment<&'lifetime Peptidoform<UnAmbiguous>, Peptidoform<A>>)>>,
}

A consecutive alignment, which align one sequence to multiple sequences.

Fields

alignments: Vec<Vec<(Allele<'lifetime>, Alignment<&'lifetime Peptidoform<UnAmbiguous>, Peptidoform<A>>)>>

All underlying alignments, per gene there is a vector containing all options for that gene.

Implementations

impl<'lifetime, A> ConsecutiveAlignment<'lifetime, A>

pub fn main_alignment( &self, ) -> Vec<&(Allele<'lifetime>, Alignment<&'lifetime Peptidoform<UnAmbiguous>, Peptidoform<A>>)>

Get the main alignment, the alignment taking the best alignment for each gene.

impl<A: AtMax<Linear>> ConsecutiveAlignment<'_, A>

pub fn regions(&self) -> Vec<(Peptidoform<A>, Region)>

Break up in the main alignment into the regions as annotated in the alleles.

Trait Implementations

impl<'lifetime, A: Clone> Clone for ConsecutiveAlignment<'lifetime, A>

fn clone(&self) -> ConsecutiveAlignment<'lifetime, A>

Returns a duplicate of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl<'lifetime, A: Debug> Debug for ConsecutiveAlignment<'lifetime, A>

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl<'lifetime, A: PartialEq> PartialEq for ConsecutiveAlignment<'lifetime, A>

fn eq(&self, other: &ConsecutiveAlignment<'lifetime, A>) -> bool

Tests for self and other values to be equal, and is used by ==.

fn ne(&self, other: &Rhs) -> bool

Tests for !=. The default implementation is almost always sufficient, and should not be overridden without very good reason.

impl<'lifetime, A: Eq> Eq for ConsecutiveAlignment<'lifetime, A>

impl<'lifetime, A> StructuralPartialEq for ConsecutiveAlignment<'lifetime, A>