Struct AlignType 

pub struct AlignType {
    pub left: Side,
    pub right: Side,
}

The type of alignment to perform

Fields

left: Side

The settings for the left side

right: Side

The settings for the right side

Implementations

impl AlignType

pub const GLOBAL: Self

Global alignment, which tries to find the best alignment to link both sequences fully to each other, like the Needleman Wunsch algorithm

pub const LOCAL: Self

Local alignment, which tries to find the best patch of both sequences to align to each other, this could lead to trailing ends on both sides of both sequences, like the Smith Waterman

pub const GLOBAL_A: Self

Hybrid alignment, the first sequence will be fully aligned to the second sequence, this could lead to trailing ends on the second sequence but not on the first.

pub const GLOBAL_B: Self

Hybrid alignment, the second sequence will be fully aligned to the first sequence, this could lead to trailing ends on the first sequence but not on the second.

pub const GLOBAL_LEFT: Self

Hybrid alignment, globally align the left (start) side of the alignment

pub const GLOBAL_RIGHT: Self

Hybrid alignment, globally align the right (end) side of the alignment

pub const EXTEND_A: Self

Hybrid alignment, extend sequence a with sequence b (▀▀██▄▄)

pub const EXTEND_B: Self

Hybrid alignment, extend sequence b with sequence a (▄▄██▀▀)

pub const EITHER_GLOBAL: Self

Alignment where on both side either of the sequences has to be aligned globally, see Side::EitherGlobal.

pub fn description(self) -> String

Get a descriptive name for this alignment type

pub fn symbol(self) -> String

Get a concise symbolic representation for this alignment type

Trait Implementations

impl Clone for AlignType

fn clone(&self) -> AlignType

Returns a duplicate of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Debug for AlignType

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl Default for AlignType

fn default() -> Self

Defaults to global alignment

impl<'de> Deserialize<'de> for AlignType

fn deserialize<__D>(__deserializer: __D) -> Result<Self, __D::Error>

where __D: Deserializer<'de>,

Deserialize this value from the given Serde deserializer.

impl Display for AlignType

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl FromStr for AlignType

type Err = ()

The associated error which can be returned from parsing.

fn from_str(s: &str) -> Result<Self, Self::Err>

Parses a string s to return a value of this type.

impl Hash for AlignType

fn hash<__H: Hasher>(&self, state: &mut __H)

Feeds this value into the given Hasher.

fn hash_slice<H>(data: &[Self], state: &mut H)

where H: Hasher, Self: Sized,

Feeds a slice of this type into the given Hasher.

impl Ord for AlignType

fn cmp(&self, other: &AlignType) -> Ordering

This method returns an Ordering between self and other.

fn max(self, other: Self) -> Self

where Self: Sized,

Compares and returns the maximum of two values.

fn min(self, other: Self) -> Self

where Self: Sized,

Compares and returns the minimum of two values.

fn clamp(self, min: Self, max: Self) -> Self

where Self: Sized,

Restrict a value to a certain interval.

impl PartialEq for AlignType

fn eq(&self, other: &AlignType) -> bool

Tests for self and other values to be equal, and is used by ==.

fn ne(&self, other: &Rhs) -> bool

Tests for !=. The default implementation is almost always sufficient, and should not be overridden without very good reason.

impl PartialOrd for AlignType

fn partial_cmp(&self, other: &AlignType) -> Option<Ordering>

This method returns an ordering between self and other values if one exists.

fn lt(&self, other: &Rhs) -> bool

Tests less than (for self and other) and is used by the < operator.

fn le(&self, other: &Rhs) -> bool

Tests less than or equal to (for self and other) and is used by the <= operator.

fn gt(&self, other: &Rhs) -> bool

Tests greater than (for self and other) and is used by the > operator.

fn ge(&self, other: &Rhs) -> bool

Tests greater than or equal to (for self and other) and is used by the >= operator.

impl Serialize for AlignType

fn serialize<__S>(&self, __serializer: __S) -> Result<__S::Ok, __S::Error>

where __S: Serializer,

Serialize this value into the given Serde serializer.

impl Copy for AlignType

impl Eq for AlignType

impl StructuralPartialEq for AlignType