List of all items
Structs
- _G_fpos64_t
- _G_fpos_t
- _IO_FILE
- _IO_codecvt
- _IO_marker
- _IO_wide_data
- __BindgenBitfieldUnit
- __IncompleteArrayField
- __atomic_wide_counter__bindgen_ty_1
- __fsid_t
- __kstring_t
- __locale_data
- __locale_struct
- __mbstate_t
- __once_flag
- __pthread_cond_s
- __pthread_internal_list
- __pthread_internal_slist
- __pthread_mutex_s
- __pthread_rwlock_arch_t
- __sigset_t
- __va_list_tag
- div_t
- drand48_data
- fd_set
- gzFile_s
- gz_header_s
- internal_state
- ketopt_t
- km_stat_t
- ko_longopt_t
- ks_isort_stack_t
- ksw_extz_t
- ldiv_t
- lldiv_t
- max_align_t
- mm128_t
- mm128_v
- mm_bseq1_t
- mm_bseq_file_s
- mm_extra_t
- mm_idx_bucket_s
- mm_idx_intv_s
- mm_idx_reader_t
- mm_idx_seq_t
- mm_idx_t
- mm_idxopt_t
- mm_mapopt_t
- mm_reg1_t
- mm_seed_t
- mm_seg_t
- mm_tbuf_s
- random_data
- sdust_buf_s
- timespec
- timeval
- z_stream_s
Unions
- __atomic_wide_counter
- __mbstate_t__bindgen_ty_1
- mm_idx_reader_t__bindgen_ty_1
- pthread_attr_t
- pthread_barrier_t
- pthread_barrierattr_t
- pthread_cond_t
- pthread_condattr_t
- pthread_mutex_t
- pthread_mutexattr_t
- pthread_rwlock_t
- pthread_rwlockattr_t
Functions
- _Exit
- __assert
- __assert_fail
- __assert_perror_fail
- __ctype_b_loc
- __ctype_get_mb_cur_max
- __ctype_tolower_loc
- __ctype_toupper_loc
- __getdelim
- __getpgid
- __memcmpeq
- __overflow
- __stpcpy
- __stpncpy
- __strtok_r
- __tolower_l
- __toupper_l
- __uflow
- _exit
- _tolower
- _toupper
- a64l
- abort
- abs
- access
- acct
- adler32
- adler32_combine
- adler32_z
- alarm
- aligned_alloc
- alloca
- arc4random
- arc4random_buf
- arc4random_uniform
- at_quick_exit
- atexit
- atof
- atoi
- atol
- atoll
- bcmp
- bcopy
- brk
- bsearch
- bzero
- calloc
- chdir
- chown
- chroot
- clearenv
- clearerr
- clearerr_unlocked
- close
- closefrom
- compress
- compress2
- compressBound
- confstr
- cputime
- crc32
- crc32_combine
- crc32_combine_gen
- crc32_combine_op
- crc32_z
- crypt
- ctermid
- daemon
- deflate
- deflateBound
- deflateCopy
- deflateEnd
- deflateGetDictionary
- deflateInit2_
- deflateInit_
- deflateParams
- deflatePending
- deflatePrime
- deflateReset
- deflateResetKeep
- deflateSetDictionary
- deflateSetHeader
- deflateTune
- div
- dprintf
- drand48
- drand48_r
- dup
- dup2
- ecvt
- ecvt_r
- endusershell
- erand48
- erand48_r
- execl
- execle
- execlp
- execv
- execve
- execvp
- exit
- explicit_bzero
- faccessat
- fchdir
- fchown
- fchownat
- fclose
- fcvt
- fcvt_r
- fdatasync
- fdopen
- feof
- feof_unlocked
- ferror
- ferror_unlocked
- fexecve
- fflush
- fflush_unlocked
- ffs
- ffsl
- ffsll
- fgetc
- fgetc_unlocked
- fgetpos
- fgets
- fileno
- fileno_unlocked
- flockfile
- fmemopen
- fopen
- fork
- fpathconf
- fprintf
- fputc
- fputc_unlocked
- fputs
- fread
- fread_unlocked
- free
- freopen
- fscanf
- fscanf1
- fseek
- fseeko
- fsetpos
- fsync
- ftell
- ftello
- ftruncate
- ftrylockfile
- funlockfile
- fwrite
- fwrite_unlocked
- gcvt
- get_crc_table
- getc
- getc_unlocked
- getchar
- getchar_unlocked
- getcwd
- getdelim
- getdomainname
- getdtablesize
- getegid
- getentropy
- getenv
- geteuid
- getgid
- getgroups
- gethostid
- gethostname
- getline
- getloadavg
- getlogin
- getlogin_r
- getopt
- getpagesize
- getpass
- getpgid
- getpgrp
- getpid
- getppid
- getsid
- getsubopt
- getuid
- getusershell
- getw
- getwd
- gzbuffer
- gzclearerr
- gzclose
- gzclose_r
- gzclose_w
- gzdirect
- gzdopen
- gzeof
- gzerror
- gzflush
- gzfread
- gzfwrite
- gzgetc
- gzgetc_
- gzgets
- gzoffset
- gzopen
- gzprintf
- gzputc
- gzputs
- gzread
- gzrewind
- gzseek
- gzsetparams
- gztell
- gzungetc
- gzvprintf
- gzwrite
- index
- inflate
- inflateBack
- inflateBackEnd
- inflateBackInit_
- inflateCodesUsed
- inflateCopy
- inflateEnd
- inflateGetDictionary
- inflateGetHeader
- inflateInit2_
- inflateInit_
- inflateMark
- inflatePrime
- inflateReset
- inflateReset2
- inflateResetKeep
- inflateSetDictionary
- inflateSync
- inflateSyncPoint
- inflateUndermine
- inflateValidate
- initstate
- initstate_r
- isalnum
- isalnum_l
- isalpha
- isalpha_l
- isascii
- isatty
- isblank
- isblank_l
- iscntrl
- iscntrl_l
- isdigit
- isdigit_l
- isgraph
- isgraph_l
- islower
- islower_l
- isprint
- isprint_l
- ispunct
- ispunct_l
- isspace
- isspace_l
- isupper
- isupper_l
- isxdigit
- isxdigit_l
- jrand48
- jrand48_r
- kcalloc
- kfree
- km_destroy
- km_init
- km_init2
- km_stat
- km_stat_print
- kmalloc
- krealloc
- krelocate
- ks_ksmall_uint32_t
- ksw_extd
- ksw_extd2_sse
- ksw_extf2_sse
- ksw_exts2_sse
- ksw_extz
- ksw_extz2_sse
- ksw_gg
- ksw_gg2
- ksw_gg2_sse
- ksw_ll_i16
- ksw_ll_qinit
- kt_for
- kt_pipeline
- l64a
- labs
- lchown
- lcong48
- lcong48_r
- ldiv
- link
- linkat
- llabs
- lldiv
- lockf
- lrand48
- lrand48_r
- lseek
- malloc
- mblen
- mbstowcs
- mbtowc
- memccpy
- memchr
- memcmp
- memcpy
- memmove
- memset
- mg_lchain_dp
- mg_lchain_rmq
- mkdtemp
- mkstemp
- mkstemps
- mktemp
- mm_align_skeleton
- mm_bseq_close
- mm_bseq_eof
- mm_bseq_open
- mm_bseq_read
- mm_bseq_read2
- mm_bseq_read3
- mm_bseq_read_frag
- mm_bseq_read_frag2
- mm_chain_dp
- mm_check_opt
- mm_collect_matches
- mm_err_fread
- mm_err_fwrite
- mm_err_puts
- mm_est_err
- mm_event_identity
- mm_filter_regs
- mm_filter_strand_retained
- mm_gen_MD
- mm_gen_cs
- mm_gen_regs
- mm_hit_sort
- mm_idx_alt_read
- mm_idx_bed_junc
- mm_idx_bed_read
- mm_idx_build
- mm_idx_cal_max_occ
- mm_idx_destroy
- mm_idx_dump
- mm_idx_get
- mm_idx_getseq
- mm_idx_getseq2
- mm_idx_index_name
- mm_idx_is_idx
- mm_idx_load
- mm_idx_name2id
- mm_idx_reader_close
- mm_idx_reader_eof
- mm_idx_reader_open
- mm_idx_reader_read
- mm_idx_stat
- mm_idx_str
- mm_idxopt_init
- mm_map
- mm_map_file
- mm_map_file_frag
- mm_map_frag
- mm_mapopt_init
- mm_mapopt_max_intron_len
- mm_mapopt_update
- mm_mark_alt
- mm_pair
- mm_seed_mz_flt
- mm_seg_free
- mm_seg_gen
- mm_select_sub
- mm_select_sub_multi
- mm_set_mapq
- mm_set_opt
- mm_set_parent
- mm_set_sam_pri
- mm_sketch
- mm_split_init
- mm_split_merge
- mm_split_merge_prep
- mm_split_reg
- mm_split_rm_tmp
- mm_squeeze_a
- mm_sync_regs
- mm_tbuf_destroy
- mm_tbuf_get_km
- mm_tbuf_init
- mm_update_dp_max
- mm_write_paf
- mm_write_paf3
- mm_write_sam
- mm_write_sam2
- mm_write_sam3
- mm_write_sam_hdr
- mrand48
- mrand48_r
- nice
- nrand48
- nrand48_r
- on_exit
- open_memstream
- pathconf
- pause
- pclose
- peakrss
- perror
- pipe
- popen
- posix_memalign
- pread
- printf
- profil
- pselect
- putc
- putc_unlocked
- putchar
- putchar_unlocked
- putenv
- puts
- putw
- pwrite
- qecvt
- qecvt_r
- qfcvt
- qfcvt_r
- qgcvt
- qsort
- quick_exit
- radix_sort_128x
- radix_sort_64
- rand
- rand_r
- random
- random_r
- read
- readlink
- readlinkat
- realloc
- reallocarray
- realpath
- realtime
- remove
- rename
- renameat
- revoke
- rewind
- rindex
- rmdir
- rpmatch
- sbrk
- scanf
- scanf1
- sdust
- sdust_buf_destroy
- sdust_buf_init
- sdust_core
- seed48
- seed48_r
- select
- setbuf
- setbuffer
- setdomainname
- setegid
- setenv
- seteuid
- setgid
- sethostid
- sethostname
- setlinebuf
- setlogin
- setpgid
- setpgrp
- setregid
- setreuid
- setsid
- setstate
- setstate_r
- setuid
- setusershell
- setvbuf
- sleep
- snprintf
- sprintf
- srand
- srand48
- srand48_r
- srandom
- srandom_r
- sscanf
- sscanf1
- stpcpy
- stpncpy
- strcasecmp
- strcasecmp_l
- strcat
- strchr
- strcmp
- strcoll
- strcoll_l
- strcpy
- strcspn
- strdup
- strerror
- strerror_l
- strerror_r
- strlen
- strncasecmp
- strncasecmp_l
- strncat
- strncmp
- strncpy
- strndup
- strnlen
- strpbrk
- strrchr
- strsep
- strsignal
- strspn
- strstr
- strtod
- strtof
- strtok
- strtok_r
- strtol
- strtold
- strtoll
- strtoq
- strtoul
- strtoull
- strtouq
- strxfrm
- strxfrm_l
- symlink
- symlinkat
- sync
- syscall
- sysconf
- system
- tcgetpgrp
- tcsetpgrp
- tempnam
- tmpfile
- tmpnam
- tmpnam_r
- toascii
- tolower
- tolower_l
- toupper
- toupper_l
- truncate
- ttyname
- ttyname_r
- ttyslot
- ualarm
- uncompress
- uncompress2
- ungetc
- unlink
- unlinkat
- unsetenv
- usleep
- valloc
- vdprintf
- vfork
- vfprintf
- vfscanf
- vfscanf1
- vhangup
- vprintf
- vscanf
- vscanf1
- vsnprintf
- vsprintf
- vsscanf
- vsscanf1
- wcstombs
- wctomb
- write
- zError
- zlibCompileFlags
- zlibVersion
Type Aliases
- Byte
- Bytef
- FILE
- _Float32
- _Float32x
- _Float64
- _Float64x
- _IO_lock_t
- __FILE
- __blkcnt64_t
- __blkcnt_t
- __blksize_t
- __builtin_va_list
- __caddr_t
- __clock_t
- __clockid_t
- __compar_fn_t
- __daddr_t
- __dev_t
- __fd_mask
- __fpos64_t
- __fpos_t
- __fsblkcnt64_t
- __fsblkcnt_t
- __fsfilcnt64_t
- __fsfilcnt_t
- __fsword_t
- __gid_t
- __gnuc_va_list
- __id_t
- __ino64_t
- __ino_t
- __int16_t
- __int32_t
- __int64_t
- __int8_t
- __int_least16_t
- __int_least32_t
- __int_least64_t
- __int_least8_t
- __intmax_t
- __intptr_t
- __key_t
- __locale_t
- __loff_t
- __mode_t
- __nlink_t
- __off64_t
- __off_t
- __pid_t
- __pthread_list_t
- __pthread_slist_t
- __quad_t
- __rlim64_t
- __rlim_t
- __sig_atomic_t
- __socklen_t
- __ssize_t
- __suseconds64_t
- __suseconds_t
- __syscall_slong_t
- __syscall_ulong_t
- __thrd_t
- __time_t
- __timer_t
- __tss_t
- __u_char
- __u_int
- __u_long
- __u_quad_t
- __u_short
- __uid_t
- __uint16_t
- __uint32_t
- __uint64_t
- __uint8_t
- __uint_least16_t
- __uint_least32_t
- __uint_least64_t
- __uint_least8_t
- __uintmax_t
- __useconds_t
- _bindgen_ty_1
- _bindgen_ty_2
- _bindgen_ty_3
- _bindgen_ty_4
- alloc_func
- blkcnt_t
- blksize_t
- caddr_t
- charf
- clock_t
- clockid_t
- daddr_t
- dev_t
- fd_mask
- fpos_t
- free_func
- fsblkcnt_t
- fsfilcnt_t
- fsid_t
- gid_t
- gzFile
- gz_header
- gz_headerp
- id_t
- in_func
- ino_t
- int_fast16_t
- int_fast32_t
- int_fast64_t
- int_fast8_t
- int_least16_t
- int_least32_t
- int_least64_t
- int_least8_t
- intf
- intmax_t
- key_t
- kh_cstr_t
- khint32_t
- khint64_t
- khint_t
- khiter_t
- ksstr_t
- kstring_t
- locale_t
- loff_t
- mm_bseq_file_t
- mm_tbuf_t
- mode_t
- nlink_t
- off_t
- out_func
- pid_t
- pthread_key_t
- pthread_once_t
- pthread_spinlock_t
- pthread_t
- quad_t
- register_t
- sdust_buf_t
- sigset_t
- socklen_t
- suseconds_t
- time_t
- timer_t
- uInt
- uIntf
- uLong
- uLongf
- u_char
- u_int
- u_int16_t
- u_int32_t
- u_int64_t
- u_int8_t
- u_long
- u_quad_t
- u_short
- uid_t
- uint
- uint_fast16_t
- uint_fast32_t
- uint_fast64_t
- uint_fast8_t
- uint_least16_t
- uint_least32_t
- uint_least64_t
- uint_least8_t
- uintmax_t
- ulong
- useconds_t
- ushort
- va_list
- voidp
- voidpc
- voidpf
- wchar_t
- z_crc_t
- z_size_t
- z_stream
- z_streamp
Statics
- KETOPT_INIT
- __environ
- mm_dbg_flag
- mm_realtime0
- mm_verbose
- optarg
- opterr
- optind
- optopt
- seq_comp_table
- seq_nt4_table
- stderr
- stdin
- stdout
Constants
- AC_VERSION_KHASH_H
- AIO_PRIO_DELTA_MAX
- ARG_MAX
- BC_BASE_MAX
- BC_DIM_MAX
- BC_SCALE_MAX
- BC_STRING_MAX
- BIG_ENDIAN
- BUFSIZ
- BYTE_ORDER
- CHARCLASS_NAME_MAX
- COLL_WEIGHTS_MAX
- DELAYTIMER_MAX
- EOF
- EXIT_FAILURE
- EXIT_SUCCESS
- EXPR_NEST_MAX
- FD_SETSIZE
- FILENAME_MAX
- FOPEN_MAX
- F_LOCK
- F_OK
- F_TEST
- F_TLOCK
- F_ULOCK
- HOST_NAME_MAX
- INT16_MAX
- INT16_MIN
- INT32_MAX
- INT32_MIN
- INT8_MAX
- INT8_MIN
- INTPTR_MAX
- INTPTR_MIN
- INT_FAST16_MAX
- INT_FAST16_MIN
- INT_FAST32_MAX
- INT_FAST32_MIN
- INT_FAST8_MAX
- INT_FAST8_MIN
- INT_LEAST16_MAX
- INT_LEAST16_MIN
- INT_LEAST32_MAX
- INT_LEAST32_MIN
- INT_LEAST8_MAX
- INT_LEAST8_MIN
- KRMQ_MAX_DEPTH
- KSW_CIGAR_DEL
- KSW_CIGAR_INS
- KSW_CIGAR_MATCH
- KSW_CIGAR_N_SKIP
- KSW_EZ_APPROX_DROP
- KSW_EZ_APPROX_MAX
- KSW_EZ_EXTZ_ONLY
- KSW_EZ_GENERIC_SC
- KSW_EZ_REV_CIGAR
- KSW_EZ_RIGHT
- KSW_EZ_SCORE_ONLY
- KSW_EZ_SPLICE_CMPLX
- KSW_EZ_SPLICE_FLANK
- KSW_EZ_SPLICE_FOR
- KSW_EZ_SPLICE_REV
- KSW_NEG_INF
- KS_SEP_LINE
- KS_SEP_MAX
- KS_SEP_SPACE
- KS_SEP_TAB
- LINE_MAX
- LINK_MAX
- LITTLE_ENDIAN
- LOGIN_NAME_MAX
- L_INCR
- L_SET
- L_XTND
- L_ctermid
- L_tmpnam
- MAX_CANON
- MAX_INPUT
- MAX_MEM_LEVEL
- MAX_WBITS
- MB_LEN_MAX
- MM_CIGAR_DEL
- MM_CIGAR_EQ_MATCH
- MM_CIGAR_HARDCLIP
- MM_CIGAR_INS
- MM_CIGAR_MATCH
- MM_CIGAR_N_SKIP
- MM_CIGAR_PADDING
- MM_CIGAR_SOFTCLIP
- MM_CIGAR_STR
- MM_CIGAR_X_MISMATCH
- MM_DBG_NO_KALLOC
- MM_DBG_PRINT_ALN_SEQ
- MM_DBG_PRINT_CHAIN
- MM_DBG_PRINT_QNAME
- MM_DBG_PRINT_SEED
- MM_F_2_IO_THREADS
- MM_F_ALL_CHAINS
- MM_F_CIGAR
- MM_F_COPY_COMMENT
- MM_F_EQX
- MM_F_FOR_ONLY
- MM_F_FRAG_MODE
- MM_F_HARD_MLEVEL
- MM_F_HEAP_SORT
- MM_F_INDEPEND_SEG
- MM_F_LONG_CIGAR
- MM_F_NO_DIAG
- MM_F_NO_DUAL
- MM_F_NO_END_FLT
- MM_F_NO_HASH_NAME
- MM_F_NO_INV
- MM_F_NO_LJOIN
- MM_F_NO_PRINT_2ND
- MM_F_NO_QUAL
- MM_F_OUT_CG
- MM_F_OUT_CS
- MM_F_OUT_CS_LONG
- MM_F_OUT_DS
- MM_F_OUT_MD
- MM_F_OUT_SAM
- MM_F_PAF_NO_HIT
- MM_F_QSTRAND
- MM_F_REV_ONLY
- MM_F_RMQ
- MM_F_SAM_HIT_ONLY
- MM_F_SECONDARY_SEQ
- MM_F_SOFTCLIP
- MM_F_SPLICE
- MM_F_SPLICE_FLANK
- MM_F_SPLICE_FOR
- MM_F_SPLICE_OLD
- MM_F_SPLICE_REV
- MM_F_SR
- MM_IDX_MAGIC
- MM_I_HPC
- MM_I_NO_NAME
- MM_I_NO_SEQ
- MM_MAX_SEG
- MM_PARENT_TMP_PRI
- MM_PARENT_UNSET
- MM_SEED_IGNORE
- MM_SEED_LONG_JOIN
- MM_SEED_SEG_MASK
- MM_SEED_SEG_SHIFT
- MM_SEED_SELF
- MM_SEED_TANDEM
- MM_VERSION
- MQ_PRIO_MAX
- NAME_MAX
- NGROUPS_MAX
- NR_OPEN
- PATH_MAX
- PDP_ENDIAN
- PIPE_BUF
- PTHREAD_DESTRUCTOR_ITERATIONS
- PTHREAD_KEYS_MAX
- PTHREAD_STACK_MIN
- PTRDIFF_MAX
- PTRDIFF_MIN
- P_tmpdir
- RAND_MAX
- RE_DUP_MAX
- RS_MAX_BITS
- RS_MIN_SIZE
- RTSIG_MAX
- R_OK
- SEEK_CUR
- SEEK_END
- SEEK_SET
- SEM_VALUE_MAX
- SIG_ATOMIC_MAX
- SIG_ATOMIC_MIN
- SIZE_MAX
- STDERR_FILENO
- STDIN_FILENO
- STDOUT_FILENO
- TMP_MAX
- TTY_NAME_MAX
- UINT16_MAX
- UINT32_MAX
- UINT8_MAX
- UINTPTR_MAX
- UINT_FAST16_MAX
- UINT_FAST32_MAX
- UINT_FAST8_MAX
- UINT_LEAST16_MAX
- UINT_LEAST32_MAX
- UINT_LEAST8_MAX
- WCONTINUED
- WEXITED
- WINT_MAX
- WINT_MIN
- WNOHANG
- WNOWAIT
- WSTOPPED
- WUNTRACED
- W_OK
- XATTR_LIST_MAX
- XATTR_NAME_MAX
- XATTR_SIZE_MAX
- X_OK
- ZLIB_VERNUM
- ZLIB_VERSION
- ZLIB_VER_MAJOR
- ZLIB_VER_MINOR
- ZLIB_VER_REVISION
- ZLIB_VER_SUBREVISION
- Z_ASCII
- Z_BEST_COMPRESSION
- Z_BEST_SPEED
- Z_BINARY
- Z_BLOCK
- Z_BUF_ERROR
- Z_DATA_ERROR
- Z_DEFAULT_COMPRESSION
- Z_DEFAULT_STRATEGY
- Z_DEFLATED
- Z_ERRNO
- Z_FILTERED
- Z_FINISH
- Z_FIXED
- Z_FULL_FLUSH
- Z_HUFFMAN_ONLY
- Z_MEM_ERROR
- Z_NEED_DICT
- Z_NO_COMPRESSION
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