Crate minimap2_sys

Source

Structs§

MmIdx
_G_fpos64_t
_G_fpos_t
_IO_FILE
_IO_codecvt
_IO_marker
_IO_wide_data
__BindgenBitfieldUnit
__IncompleteArrayField
__atomic_wide_counter__bindgen_ty_1
__fsid_t
__kstring_t
__locale_data
__locale_struct
__mbstate_t
__once_flag
__pthread_cond_s
__pthread_internal_list
__pthread_internal_slist
__pthread_mutex_s
__pthread_rwlock_arch_t
__sigset_t
__va_list_tag
div_t
drand48_data
fd_set
gzFile_s
gz_header_s
internal_state
ketopt_t
km_stat_t
ko_longopt_t
ks_isort_stack_t
ksw_extz_t
ldiv_t
lldiv_t
max_align_t
mm128_t
mm128_v
mm_bseq1_t
mm_bseq_file_s
mm_extra_t
mm_idx_bucket_s
mm_idx_intv_s
mm_idx_reader_t
mm_idx_seq_t
mm_idx_t
mm_idxopt_t
mm_mapopt_t
mm_reg1_t
mm_seed_t
mm_seg_t
mm_tbuf_s
random_data
sdust_buf_s
timespec
timeval
z_stream_s

Constants§

AC_VERSION_KHASH_H
AIO_PRIO_DELTA_MAX
ARG_MAX
BC_BASE_MAX
BC_DIM_MAX
BC_SCALE_MAX
BC_STRING_MAX
BIG_ENDIAN
BUFSIZ
BYTE_ORDER
CHARCLASS_NAME_MAX
COLL_WEIGHTS_MAX
DELAYTIMER_MAX
EOF
EXIT_FAILURE
EXIT_SUCCESS
EXPR_NEST_MAX
FD_SETSIZE
FILENAME_MAX
FOPEN_MAX
F_LOCK
F_OK
F_TEST
F_TLOCK
F_ULOCK
HOST_NAME_MAX
INT8_MAX
INT8_MIN
INT16_MAX
INT16_MIN
INT32_MAX
INT32_MIN
INTPTR_MAX
INTPTR_MIN
INT_FAST8_MAX
INT_FAST8_MIN
INT_FAST16_MAX
INT_FAST16_MIN
INT_FAST32_MAX
INT_FAST32_MIN
INT_LEAST8_MAX
INT_LEAST8_MIN
INT_LEAST16_MAX
INT_LEAST16_MIN
INT_LEAST32_MAX
INT_LEAST32_MIN
KRMQ_MAX_DEPTH
KSW_CIGAR_DEL
KSW_CIGAR_INS
KSW_CIGAR_MATCH
KSW_CIGAR_N_SKIP
KSW_EZ_APPROX_DROP
KSW_EZ_APPROX_MAX
KSW_EZ_EXTZ_ONLY
KSW_EZ_GENERIC_SC
KSW_EZ_REV_CIGAR
KSW_EZ_RIGHT
KSW_EZ_SCORE_ONLY
KSW_EZ_SPLICE_CMPLX
KSW_EZ_SPLICE_FLANK
KSW_EZ_SPLICE_FOR
KSW_EZ_SPLICE_REV
KSW_NEG_INF
KS_SEP_LINE
KS_SEP_MAX
KS_SEP_SPACE
KS_SEP_TAB
LINE_MAX
LINK_MAX
LITTLE_ENDIAN
LOGIN_NAME_MAX
L_INCR
L_SET
L_XTND
L_ctermid
L_tmpnam
MAX_CANON
MAX_INPUT
MAX_MEM_LEVEL
MAX_WBITS
MB_LEN_MAX
MM_CIGAR_DEL
MM_CIGAR_EQ_MATCH
MM_CIGAR_HARDCLIP
MM_CIGAR_INS
MM_CIGAR_MATCH
MM_CIGAR_N_SKIP
MM_CIGAR_PADDING
MM_CIGAR_SOFTCLIP
MM_CIGAR_STR
MM_CIGAR_X_MISMATCH
MM_DBG_NO_KALLOC
MM_DBG_PRINT_ALN_SEQ
MM_DBG_PRINT_CHAIN
MM_DBG_PRINT_QNAME
MM_DBG_PRINT_SEED
MM_F_2_IO_THREADS
MM_F_ALL_CHAINS
MM_F_CIGAR
MM_F_COPY_COMMENT
MM_F_EQX
MM_F_FOR_ONLY
MM_F_FRAG_MODE
MM_F_HARD_MLEVEL
MM_F_HEAP_SORT
MM_F_INDEPEND_SEG
MM_F_LONG_CIGAR
MM_F_NO_DIAG
MM_F_NO_DUAL
MM_F_NO_END_FLT
MM_F_NO_HASH_NAME
MM_F_NO_INV
MM_F_NO_LJOIN
MM_F_NO_PRINT_2ND
MM_F_NO_QUAL
MM_F_OUT_CG
MM_F_OUT_CS
MM_F_OUT_CS_LONG
MM_F_OUT_DS
MM_F_OUT_MD
MM_F_OUT_SAM
MM_F_PAF_NO_HIT
MM_F_QSTRAND
MM_F_REV_ONLY
MM_F_RMQ
MM_F_SAM_HIT_ONLY
MM_F_SECONDARY_SEQ
MM_F_SOFTCLIP
MM_F_SPLICE
MM_F_SPLICE_FLANK
MM_F_SPLICE_FOR
MM_F_SPLICE_OLD
MM_F_SPLICE_REV
MM_F_SR
MM_IDX_MAGIC
MM_I_HPC
MM_I_NO_NAME
MM_I_NO_SEQ
MM_MAX_SEG
MM_PARENT_TMP_PRI
MM_PARENT_UNSET
MM_SEED_IGNORE
MM_SEED_LONG_JOIN
MM_SEED_SEG_MASK
MM_SEED_SEG_SHIFT
MM_SEED_SELF
MM_SEED_TANDEM
MM_VERSION
MQ_PRIO_MAX
NAME_MAX
NGROUPS_MAX
NR_OPEN
PATH_MAX
PDP_ENDIAN
PIPE_BUF
PTHREAD_DESTRUCTOR_ITERATIONS
PTHREAD_KEYS_MAX
PTHREAD_STACK_MIN
PTRDIFF_MAX
PTRDIFF_MIN
P_tmpdir
RAND_MAX
RE_DUP_MAX
RS_MAX_BITS
RS_MIN_SIZE
RTSIG_MAX
R_OK
SEEK_CUR
SEEK_END
SEEK_SET
SEM_VALUE_MAX
SIG_ATOMIC_MAX
SIG_ATOMIC_MIN
SIZE_MAX
STDERR_FILENO
STDIN_FILENO
STDOUT_FILENO
TMP_MAX
TTY_NAME_MAX
UINT8_MAX
UINT16_MAX
UINT32_MAX
UINTPTR_MAX
UINT_FAST8_MAX
UINT_FAST16_MAX
UINT_FAST32_MAX
UINT_LEAST8_MAX
UINT_LEAST16_MAX
UINT_LEAST32_MAX
WCONTINUED
WEXITED
WINT_MAX
WINT_MIN
WNOHANG
WNOWAIT
WSTOPPED
WUNTRACED
W_OK
XATTR_LIST_MAX
XATTR_NAME_MAX
XATTR_SIZE_MAX
X_OK
ZLIB_VERNUM
ZLIB_VERSION
ZLIB_VER_MAJOR
ZLIB_VER_MINOR
ZLIB_VER_REVISION
ZLIB_VER_SUBREVISION
Z_ASCII
Z_BEST_COMPRESSION
Z_BEST_SPEED
Z_BINARY
Z_BLOCK
Z_BUF_ERROR
Z_DATA_ERROR
Z_DEFAULT_COMPRESSION
Z_DEFAULT_STRATEGY
Z_DEFLATED
Z_ERRNO
Z_FILTERED
Z_FINISH
Z_FIXED
Z_FULL_FLUSH
Z_HUFFMAN_ONLY
Z_MEM_ERROR
Z_NEED_DICT
Z_NO_COMPRESSION
Z_NO_FLUSH
Z_NULL
Z_OK
Z_PARTIAL_FLUSH
Z_RLE
Z_STREAM_END
Z_STREAM_ERROR
Z_SYNC_FLUSH
Z_TEXT
Z_TREES
Z_UNKNOWN
Z_VERSION_ERROR
_ALLOCA_H
_ASSERT_H
_ATFILE_SOURCE
_BITS_BYTESWAP_H
_BITS_ENDIANNESS_H
_BITS_ENDIAN_H
_BITS_POSIX1_LIM_H
_BITS_POSIX2_LIM_H
_BITS_POSIX_OPT_H
_BITS_PTHREADTYPES_ARCH_H
_BITS_PTHREADTYPES_COMMON_H
_BITS_STDINT_INTN_H
_BITS_STDINT_UINTN_H
_BITS_STDIO_LIM_H
_BITS_TIME64_H
_BITS_TYPESIZES_H
_BITS_TYPES_H
_BITS_TYPES_LOCALE_T_H
_BITS_TYPES___LOCALE_T_H
_BITS_UINTN_IDENTITY_H
_BITS_WCHAR_H
_CS_GNU_LIBC_VERSION
_CS_GNU_LIBPTHREAD_VERSION
_CS_LFS64_CFLAGS
_CS_LFS64_LDFLAGS
_CS_LFS64_LIBS
_CS_LFS64_LINTFLAGS
_CS_LFS_CFLAGS
_CS_LFS_LDFLAGS
_CS_LFS_LIBS
_CS_LFS_LINTFLAGS
_CS_PATH
_CS_POSIX_V6_ILP32_OFF32_CFLAGS
_CS_POSIX_V6_ILP32_OFF32_LDFLAGS
_CS_POSIX_V6_ILP32_OFF32_LIBS
_CS_POSIX_V6_ILP32_OFF32_LINTFLAGS
_CS_POSIX_V6_ILP32_OFFBIG_CFLAGS
_CS_POSIX_V6_ILP32_OFFBIG_LDFLAGS
_CS_POSIX_V6_ILP32_OFFBIG_LIBS
_CS_POSIX_V6_ILP32_OFFBIG_LINTFLAGS
_CS_POSIX_V6_LP64_OFF64_CFLAGS
_CS_POSIX_V6_LP64_OFF64_LDFLAGS
_CS_POSIX_V6_LP64_OFF64_LIBS
_CS_POSIX_V6_LP64_OFF64_LINTFLAGS
_CS_POSIX_V6_LPBIG_OFFBIG_CFLAGS
_CS_POSIX_V6_LPBIG_OFFBIG_LDFLAGS
_CS_POSIX_V6_LPBIG_OFFBIG_LIBS
_CS_POSIX_V6_LPBIG_OFFBIG_LINTFLAGS
_CS_POSIX_V7_ILP32_OFF32_CFLAGS
_CS_POSIX_V7_ILP32_OFF32_LDFLAGS
_CS_POSIX_V7_ILP32_OFF32_LIBS
_CS_POSIX_V7_ILP32_OFF32_LINTFLAGS
_CS_POSIX_V7_ILP32_OFFBIG_CFLAGS
_CS_POSIX_V7_ILP32_OFFBIG_LDFLAGS
_CS_POSIX_V7_ILP32_OFFBIG_LIBS
_CS_POSIX_V7_ILP32_OFFBIG_LINTFLAGS
_CS_POSIX_V7_LP64_OFF64_CFLAGS
_CS_POSIX_V7_LP64_OFF64_LDFLAGS
_CS_POSIX_V7_LP64_OFF64_LIBS
_CS_POSIX_V7_LP64_OFF64_LINTFLAGS
_CS_POSIX_V7_LPBIG_OFFBIG_CFLAGS
_CS_POSIX_V7_LPBIG_OFFBIG_LDFLAGS
_CS_POSIX_V7_LPBIG_OFFBIG_LIBS
_CS_POSIX_V7_LPBIG_OFFBIG_LINTFLAGS
_CS_V5_WIDTH_RESTRICTED_ENVS
_CS_V6_ENV
_CS_V6_WIDTH_RESTRICTED_ENVS
_CS_V7_ENV
_CS_V7_WIDTH_RESTRICTED_ENVS
_CS_XBS5_ILP32_OFF32_CFLAGS
_CS_XBS5_ILP32_OFF32_LDFLAGS
_CS_XBS5_ILP32_OFF32_LIBS
_CS_XBS5_ILP32_OFF32_LINTFLAGS
_CS_XBS5_ILP32_OFFBIG_CFLAGS
_CS_XBS5_ILP32_OFFBIG_LDFLAGS
_CS_XBS5_ILP32_OFFBIG_LIBS
_CS_XBS5_ILP32_OFFBIG_LINTFLAGS
_CS_XBS5_LP64_OFF64_CFLAGS
_CS_XBS5_LP64_OFF64_LDFLAGS
_CS_XBS5_LP64_OFF64_LIBS
_CS_XBS5_LP64_OFF64_LINTFLAGS
_CS_XBS5_LPBIG_OFFBIG_CFLAGS
_CS_XBS5_LPBIG_OFFBIG_LDFLAGS
_CS_XBS5_LPBIG_OFFBIG_LIBS
_CS_XBS5_LPBIG_OFFBIG_LINTFLAGS
_CTYPE_H
_DEFAULT_SOURCE
_ENDIAN_H
_FEATURES_H
_GETOPT_CORE_H
_GETOPT_POSIX_H
_IOFBF
_IOLBF
_IONBF
_IO_EOF_SEEN
_IO_ERR_SEEN
_IO_USER_LOCK
_ISalnum
_ISalpha
_ISblank
_IScntrl
_ISdigit
_ISgraph
_ISlower
_ISprint
_ISpunct
_ISspace
_ISupper
_ISxdigit
_LFS64_ASYNCHRONOUS_IO
_LFS64_LARGEFILE
_LFS64_STDIO
_LFS_ASYNCHRONOUS_IO
_LFS_LARGEFILE
_LIBC_LIMITS_H_
_PC_2_SYMLINKS
_PC_ALLOC_SIZE_MIN
_PC_ASYNC_IO
_PC_CHOWN_RESTRICTED
_PC_FILESIZEBITS
_PC_LINK_MAX
_PC_MAX_CANON
_PC_MAX_INPUT
_PC_NAME_MAX
_PC_NO_TRUNC
_PC_PATH_MAX
_PC_PIPE_BUF
_PC_PRIO_IO
_PC_REC_INCR_XFER_SIZE
_PC_REC_MAX_XFER_SIZE
_PC_REC_MIN_XFER_SIZE
_PC_REC_XFER_ALIGN
_PC_SOCK_MAXBUF
_PC_SYMLINK_MAX
_PC_SYNC_IO
_PC_VDISABLE
_POSIX2_BC_BASE_MAX
_POSIX2_BC_DIM_MAX
_POSIX2_BC_SCALE_MAX
_POSIX2_BC_STRING_MAX
_POSIX2_CHARCLASS_NAME_MAX
_POSIX2_CHAR_TERM
_POSIX2_COLL_WEIGHTS_MAX
_POSIX2_C_BIND
_POSIX2_C_DEV
_POSIX2_C_VERSION
_POSIX2_EXPR_NEST_MAX
_POSIX2_LINE_MAX
_POSIX2_LOCALEDEF
_POSIX2_RE_DUP_MAX
_POSIX2_SW_DEV
_POSIX2_VERSION
_POSIX_ADVISORY_INFO
_POSIX_AIO_LISTIO_MAX
_POSIX_AIO_MAX
_POSIX_ARG_MAX
_POSIX_ASYNCHRONOUS_IO
_POSIX_ASYNC_IO
_POSIX_BARRIERS
_POSIX_CHILD_MAX
_POSIX_CHOWN_RESTRICTED
_POSIX_CLOCKRES_MIN
_POSIX_CLOCK_SELECTION
_POSIX_CPUTIME
_POSIX_C_SOURCE
_POSIX_DELAYTIMER_MAX
_POSIX_FSYNC
_POSIX_HOST_NAME_MAX
_POSIX_IPV6
_POSIX_JOB_CONTROL
_POSIX_LINK_MAX
_POSIX_LOGIN_NAME_MAX
_POSIX_MAPPED_FILES
_POSIX_MAX_CANON
_POSIX_MAX_INPUT
_POSIX_MEMLOCK
_POSIX_MEMLOCK_RANGE
_POSIX_MEMORY_PROTECTION
_POSIX_MESSAGE_PASSING
_POSIX_MONOTONIC_CLOCK
_POSIX_MQ_OPEN_MAX
_POSIX_MQ_PRIO_MAX
_POSIX_NAME_MAX
_POSIX_NGROUPS_MAX
_POSIX_NO_TRUNC
_POSIX_OPEN_MAX
_POSIX_PATH_MAX
_POSIX_PIPE_BUF
_POSIX_PRIORITIZED_IO
_POSIX_PRIORITY_SCHEDULING
_POSIX_RAW_SOCKETS
_POSIX_READER_WRITER_LOCKS
_POSIX_REALTIME_SIGNALS
_POSIX_REENTRANT_FUNCTIONS
_POSIX_REGEXP
_POSIX_RE_DUP_MAX
_POSIX_RTSIG_MAX
_POSIX_SAVED_IDS
_POSIX_SEMAPHORES
_POSIX_SEM_NSEMS_MAX
_POSIX_SEM_VALUE_MAX
_POSIX_SHARED_MEMORY_OBJECTS
_POSIX_SHELL
_POSIX_SIGQUEUE_MAX
_POSIX_SOURCE
_POSIX_SPAWN
_POSIX_SPIN_LOCKS
_POSIX_SPORADIC_SERVER
_POSIX_SSIZE_MAX
_POSIX_STREAM_MAX
_POSIX_SYMLINK_MAX
_POSIX_SYMLOOP_MAX
_POSIX_SYNCHRONIZED_IO
_POSIX_THREADS
_POSIX_THREAD_ATTR_STACKADDR
_POSIX_THREAD_ATTR_STACKSIZE
_POSIX_THREAD_CPUTIME
_POSIX_THREAD_DESTRUCTOR_ITERATIONS
_POSIX_THREAD_KEYS_MAX
_POSIX_THREAD_PRIORITY_SCHEDULING
_POSIX_THREAD_PRIO_INHERIT
_POSIX_THREAD_PRIO_PROTECT
_POSIX_THREAD_PROCESS_SHARED
_POSIX_THREAD_ROBUST_PRIO_INHERIT
_POSIX_THREAD_ROBUST_PRIO_PROTECT
_POSIX_THREAD_SAFE_FUNCTIONS
_POSIX_THREAD_SPORADIC_SERVER
_POSIX_THREAD_THREADS_MAX
_POSIX_TIMEOUTS
_POSIX_TIMERS
_POSIX_TIMER_MAX
_POSIX_TRACE
_POSIX_TRACE_EVENT_FILTER
_POSIX_TRACE_INHERIT
_POSIX_TRACE_LOG
_POSIX_TTY_NAME_MAX
_POSIX_TYPED_MEMORY_OBJECTS
_POSIX_TZNAME_MAX
_POSIX_V6_LP64_OFF64
_POSIX_V6_LPBIG_OFFBIG
_POSIX_V7_LP64_OFF64
_POSIX_V7_LPBIG_OFFBIG
_POSIX_VDISABLE
_POSIX_VERSION
_SC_2_CHAR_TERM
_SC_2_C_BIND
_SC_2_C_DEV
_SC_2_C_VERSION
_SC_2_FORT_DEV
_SC_2_FORT_RUN
_SC_2_LOCALEDEF
_SC_2_PBS
_SC_2_PBS_ACCOUNTING
_SC_2_PBS_CHECKPOINT
_SC_2_PBS_LOCATE
_SC_2_PBS_MESSAGE
_SC_2_PBS_TRACK
_SC_2_SW_DEV
_SC_2_UPE
_SC_2_VERSION
_SC_ADVISORY_INFO
_SC_AIO_LISTIO_MAX
_SC_AIO_MAX
_SC_AIO_PRIO_DELTA_MAX
_SC_ARG_MAX
_SC_ASYNCHRONOUS_IO
_SC_ATEXIT_MAX
_SC_AVPHYS_PAGES
_SC_BARRIERS
_SC_BASE
_SC_BC_BASE_MAX
_SC_BC_DIM_MAX
_SC_BC_SCALE_MAX
_SC_BC_STRING_MAX
_SC_CHARCLASS_NAME_MAX
_SC_CHAR_BIT
_SC_CHAR_MAX
_SC_CHAR_MIN
_SC_CHILD_MAX
_SC_CLK_TCK
_SC_CLOCK_SELECTION
_SC_COLL_WEIGHTS_MAX
_SC_CPUTIME
_SC_C_LANG_SUPPORT
_SC_C_LANG_SUPPORT_R
_SC_DELAYTIMER_MAX
_SC_DEVICE_IO
_SC_DEVICE_SPECIFIC
_SC_DEVICE_SPECIFIC_R
_SC_EQUIV_CLASS_MAX
_SC_EXPR_NEST_MAX
_SC_FD_MGMT
_SC_FIFO
_SC_FILE_ATTRIBUTES
_SC_FILE_LOCKING
_SC_FILE_SYSTEM
_SC_FSYNC
_SC_GETGR_R_SIZE_MAX
_SC_GETPW_R_SIZE_MAX
_SC_HOST_NAME_MAX
_SC_INT_MAX
_SC_INT_MIN
_SC_IOV_MAX
_SC_IPV6
_SC_JOB_CONTROL
_SC_LEVEL1_DCACHE_ASSOC
_SC_LEVEL1_DCACHE_LINESIZE
_SC_LEVEL1_DCACHE_SIZE
_SC_LEVEL1_ICACHE_ASSOC
_SC_LEVEL1_ICACHE_LINESIZE
_SC_LEVEL1_ICACHE_SIZE
_SC_LEVEL2_CACHE_ASSOC
_SC_LEVEL2_CACHE_LINESIZE
_SC_LEVEL2_CACHE_SIZE
_SC_LEVEL3_CACHE_ASSOC
_SC_LEVEL3_CACHE_LINESIZE
_SC_LEVEL3_CACHE_SIZE
_SC_LEVEL4_CACHE_ASSOC
_SC_LEVEL4_CACHE_LINESIZE
_SC_LEVEL4_CACHE_SIZE
_SC_LINE_MAX
_SC_LOGIN_NAME_MAX
_SC_LONG_BIT
_SC_MAPPED_FILES
_SC_MB_LEN_MAX
_SC_MEMLOCK
_SC_MEMLOCK_RANGE
_SC_MEMORY_PROTECTION
_SC_MESSAGE_PASSING
_SC_MINSIGSTKSZ
_SC_MONOTONIC_CLOCK
_SC_MQ_OPEN_MAX
_SC_MQ_PRIO_MAX
_SC_MULTI_PROCESS
_SC_NETWORKING
_SC_NGROUPS_MAX
_SC_NL_ARGMAX
_SC_NL_LANGMAX
_SC_NL_MSGMAX
_SC_NL_NMAX
_SC_NL_SETMAX
_SC_NL_TEXTMAX
_SC_NPROCESSORS_CONF
_SC_NPROCESSORS_ONLN
_SC_NZERO
_SC_OPEN_MAX
_SC_PAGESIZE
_SC_PASS_MAX
_SC_PHYS_PAGES
_SC_PII
_SC_PII_INTERNET
_SC_PII_INTERNET_DGRAM
_SC_PII_INTERNET_STREAM
_SC_PII_OSI
_SC_PII_OSI_CLTS
_SC_PII_OSI_COTS
_SC_PII_OSI_M
_SC_PII_SOCKET
_SC_PII_XTI
_SC_PIPE
_SC_POLL
_SC_PRIORITIZED_IO
_SC_PRIORITY_SCHEDULING
_SC_RAW_SOCKETS
_SC_READER_WRITER_LOCKS
_SC_REALTIME_SIGNALS
_SC_REGEXP
_SC_REGEX_VERSION
_SC_RE_DUP_MAX
_SC_RTSIG_MAX
_SC_SAVED_IDS
_SC_SCHAR_MAX
_SC_SCHAR_MIN
_SC_SELECT
_SC_SEMAPHORES
_SC_SEM_NSEMS_MAX
_SC_SEM_VALUE_MAX
_SC_SHARED_MEMORY_OBJECTS
_SC_SHELL
_SC_SHRT_MAX
_SC_SHRT_MIN
_SC_SIGNALS
_SC_SIGQUEUE_MAX
_SC_SIGSTKSZ
_SC_SINGLE_PROCESS
_SC_SPAWN
_SC_SPIN_LOCKS
_SC_SPORADIC_SERVER
_SC_SSIZE_MAX
_SC_SS_REPL_MAX
_SC_STREAMS
_SC_STREAM_MAX
_SC_SYMLOOP_MAX
_SC_SYNCHRONIZED_IO
_SC_SYSTEM_DATABASE
_SC_SYSTEM_DATABASE_R
_SC_THREADS
_SC_THREAD_ATTR_STACKADDR
_SC_THREAD_ATTR_STACKSIZE
_SC_THREAD_CPUTIME
_SC_THREAD_DESTRUCTOR_ITERATIONS
_SC_THREAD_KEYS_MAX
_SC_THREAD_PRIORITY_SCHEDULING
_SC_THREAD_PRIO_INHERIT
_SC_THREAD_PRIO_PROTECT
_SC_THREAD_PROCESS_SHARED
_SC_THREAD_ROBUST_PRIO_INHERIT
_SC_THREAD_ROBUST_PRIO_PROTECT
_SC_THREAD_SAFE_FUNCTIONS
_SC_THREAD_SPORADIC_SERVER
_SC_THREAD_STACK_MIN
_SC_THREAD_THREADS_MAX
_SC_TIMEOUTS
_SC_TIMERS
_SC_TIMER_MAX
_SC_TRACE
_SC_TRACE_EVENT_FILTER
_SC_TRACE_EVENT_NAME_MAX
_SC_TRACE_INHERIT
_SC_TRACE_LOG
_SC_TRACE_NAME_MAX
_SC_TRACE_SYS_MAX
_SC_TRACE_USER_EVENT_MAX
_SC_TTY_NAME_MAX
_SC_TYPED_MEMORY_OBJECTS
_SC_TZNAME_MAX
_SC_T_IOV_MAX
_SC_UCHAR_MAX
_SC_UINT_MAX
_SC_UIO_MAXIOV
_SC_ULONG_MAX
_SC_USER_GROUPS
_SC_USER_GROUPS_R
_SC_USHRT_MAX
_SC_V6_ILP32_OFF32
_SC_V6_ILP32_OFFBIG
_SC_V6_LP64_OFF64
_SC_V6_LPBIG_OFFBIG
_SC_V7_ILP32_OFF32
_SC_V7_ILP32_OFFBIG
_SC_V7_LP64_OFF64
_SC_V7_LPBIG_OFFBIG
_SC_VERSION
_SC_WORD_BIT
_SC_XBS5_ILP32_OFF32
_SC_XBS5_ILP32_OFFBIG
_SC_XBS5_LP64_OFF64
_SC_XBS5_LPBIG_OFFBIG
_SC_XOPEN_CRYPT
_SC_XOPEN_ENH_I18N
_SC_XOPEN_LEGACY
_SC_XOPEN_REALTIME
_SC_XOPEN_REALTIME_THREADS
_SC_XOPEN_SHM
_SC_XOPEN_STREAMS
_SC_XOPEN_UNIX
_SC_XOPEN_VERSION
_SC_XOPEN_XCU_VERSION
_SC_XOPEN_XPG2
_SC_XOPEN_XPG3
_SC_XOPEN_XPG4
_STDC_PREDEF_H
_STDINT_H
_STDIO_H
_STDLIB_H
_STRINGS_H
_STRING_H
_STRUCT_TIMESPEC
_SYS_CDEFS_H
_SYS_SELECT_H
_SYS_TYPES_H
_THREAD_MUTEX_INTERNAL_H
_THREAD_SHARED_TYPES_H
_UNISTD_H
_XBS5_LP64_OFF64
_XBS5_LPBIG_OFFBIG
_XOPEN_ENH_I18N
_XOPEN_LEGACY
_XOPEN_REALTIME
_XOPEN_REALTIME_THREADS
_XOPEN_SHM
_XOPEN_UNIX
_XOPEN_VERSION
_XOPEN_XCU_VERSION
_XOPEN_XPG2
_XOPEN_XPG3
_XOPEN_XPG4
__BIG_ENDIAN
__BIT_TYPES_DEFINED__
__BYTE_ORDER
__FD_SETSIZE
__FILE_defined
__FLOAT_WORD_ORDER
__GLIBC_MINOR__
__GLIBC_USE_DEPRECATED_GETS
__GLIBC_USE_DEPRECATED_SCANF
__GLIBC_USE_IEC_60559_BFP_EXT
__GLIBC_USE_IEC_60559_BFP_EXT_C2X
__GLIBC_USE_IEC_60559_EXT
__GLIBC_USE_IEC_60559_FUNCS_EXT
__GLIBC_USE_IEC_60559_FUNCS_EXT_C2X
__GLIBC_USE_IEC_60559_TYPES_EXT
__GLIBC_USE_ISOC2X
__GLIBC_USE_LIB_EXT2
__GLIBC__
__GNUC_VA_LIST
__GNU_LIBRARY__
__HAVE_DISTINCT_FLOAT16
__HAVE_DISTINCT_FLOAT32
__HAVE_DISTINCT_FLOAT64
__HAVE_DISTINCT_FLOAT32X
__HAVE_DISTINCT_FLOAT64X
__HAVE_DISTINCT_FLOAT128
__HAVE_DISTINCT_FLOAT128X
__HAVE_FLOAT16
__HAVE_FLOAT32
__HAVE_FLOAT64
__HAVE_FLOAT32X
__HAVE_FLOAT64X
__HAVE_FLOAT64X_LONG_DOUBLE
__HAVE_FLOAT128
__HAVE_FLOAT128X
__HAVE_FLOATN_NOT_TYPEDEF
__HAVE_GENERIC_SELECTION
__ILP32_OFF32_CFLAGS
__ILP32_OFF32_LDFLAGS
__ILP32_OFFBIG_CFLAGS
__ILP32_OFFBIG_LDFLAGS
__INO_T_MATCHES_INO64_T
__KERNEL_OLD_TIMEVAL_MATCHES_TIMEVAL64
__LDOUBLE_REDIRECTS_TO_FLOAT128_ABI
__LITTLE_ENDIAN
__LP64_OFF64_CFLAGS
__LP64_OFF64_LDFLAGS
__OFF_T_MATCHES_OFF64_T
__PDP_ENDIAN
__POSIX2_THIS_VERSION
__PTHREAD_MUTEX_HAVE_PREV
__RLIM_T_MATCHES_RLIM64_T
__SIZEOF_PTHREAD_ATTR_T
__SIZEOF_PTHREAD_BARRIERATTR_T
__SIZEOF_PTHREAD_BARRIER_T
__SIZEOF_PTHREAD_CONDATTR_T
__SIZEOF_PTHREAD_COND_T
__SIZEOF_PTHREAD_MUTEXATTR_T
__SIZEOF_PTHREAD_MUTEX_T
__SIZEOF_PTHREAD_RWLOCKATTR_T
__SIZEOF_PTHREAD_RWLOCK_T
__STATFS_MATCHES_STATFS64
__STDC_IEC_559_COMPLEX__
__STDC_IEC_559__
__STDC_IEC_60559_BFP__
__STDC_IEC_60559_COMPLEX__
__STDC_ISO_10646__
__SYSCALL_WORDSIZE
__TIMESIZE
__USE_ATFILE
__USE_FORTIFY_LEVEL
__USE_ISOC11
__USE_ISOC95
__USE_ISOC99
__USE_MISC
__USE_POSIX
__USE_POSIX2
__USE_POSIX199309
__USE_POSIX199506
__USE_POSIX_IMPLICITLY
__USE_XOPEN2K
__USE_XOPEN2K8
__WALL
__WCLONE
__WCOREFLAG
__WNOTHREAD
__WORDSIZE
__WORDSIZE_TIME64_COMPAT32
__W_CONTINUED
____FILE_defined
_____fpos64_t_defined
_____fpos_t_defined
____mbstate_t_defined
__ac_HASH_UPPER
__clock_t_defined
__clockid_t_defined
__glibc_c99_flexarr_available
__have_pthread_attr_t
__ldiv_t_defined
__lldiv_t_defined
__sigset_t_defined
__struct_FILE_defined
__time_t_defined
__timer_t_defined
__timeval_defined
ko_no_argument
ko_optional_argument
ko_required_argument

Statics§

KETOPT_INIT
__environ
mm_dbg_flag
mm_realtime0
mm_verbose
optarg
opterr
optind
optopt
seq_comp_table
seq_nt4_table
stderr
stdin
stdout

Functions§

_Exit
__assert
__assert_fail
__assert_perror_fail
__ctype_b_loc
__ctype_get_mb_cur_max
__ctype_tolower_loc
__ctype_toupper_loc
__getdelim
__getpgid
__memcmpeq
__overflow
__stpcpy
__stpncpy
__strtok_r
__tolower_l
__toupper_l
__uflow
_exit
_tolower
_toupper
a64l
abort
abs
access
acct
adler32
adler32_combine
adler32_z
alarm
aligned_alloc
alloca
arc4random
arc4random_buf
arc4random_uniform
at_quick_exit
atexit
atof
atoi
atol
atoll
bcmp
bcopy
brk
bsearch
bzero
calloc
chdir
chown
chroot
clearenv
clearerr
clearerr_unlocked
close
closefrom
compress
compress2
compressBound
confstr
cputime
crc32
crc32_combine
crc32_combine_gen
crc32_combine_op
crc32_z
crypt
ctermid
daemon
deflate
deflateBound
deflateCopy
deflateEnd
deflateGetDictionary
deflateInit2_
deflateInit_
deflateParams
deflatePending
deflatePrime
deflateReset
deflateResetKeep
deflateSetDictionary
deflateSetHeader
deflateTune
div
dprintf
drand48
drand48_r
dup
dup2
ecvt
ecvt_r
endusershell
erand48
erand48_r
execl
execle
execlp
execv
execve
execvp
exit
explicit_bzero
faccessat
fchdir
fchown
fchownat
fclose
fcvt
fcvt_r
fdatasync
fdopen
feof
feof_unlocked
ferror
ferror_unlocked
fexecve
fflush
fflush_unlocked
ffs
ffsl
ffsll
fgetc
fgetc_unlocked
fgetpos
fgets
fileno
fileno_unlocked
flockfile
fmemopen
fopen
fork
fpathconf
fprintf
fputc
fputc_unlocked
fputs
fread
fread_unlocked
free
freopen
fscanf
fscanf1
fseek
fseeko
fsetpos
fsync
ftell
ftello
ftruncate
ftrylockfile
funlockfile
fwrite
fwrite_unlocked
gcvt
get_crc_table
getc
getc_unlocked
getchar
getchar_unlocked
getcwd
getdelim
getdomainname
getdtablesize
getegid
getentropy
getenv
geteuid
getgid
getgroups
gethostid
gethostname
getline
getloadavg
getlogin
getlogin_r
getopt
getpagesize
getpass
getpgid
getpgrp
getpid
getppid
getsid
getsubopt
getuid
getusershell
getw
getwd
gzbuffer
gzclearerr
gzclose
gzclose_r
gzclose_w
gzdirect
gzdopen
gzeof
gzerror
gzflush
gzfread
gzfwrite
gzgetc
gzgetc_
gzgets
gzoffset
gzopen
gzprintf
gzputc
gzputs
gzread
gzrewind
gzseek
gzsetparams
gztell
gzungetc
gzvprintf
gzwrite
index
inflate
inflateBack
inflateBackEnd
inflateBackInit_
inflateCodesUsed
inflateCopy
inflateEnd
inflateGetDictionary
inflateGetHeader
inflateInit2_
inflateInit_
inflateMark
inflatePrime
inflateReset
inflateReset2
inflateResetKeep
inflateSetDictionary
inflateSync
inflateSyncPoint
inflateUndermine
inflateValidate
initstate
initstate_r
isalnum
isalnum_l
isalpha
isalpha_l
isascii
isatty
isblank
isblank_l
iscntrl
iscntrl_l
isdigit
isdigit_l
isgraph
isgraph_l
islower
islower_l
isprint
isprint_l
ispunct
ispunct_l
isspace
isspace_l
isupper
isupper_l
isxdigit
isxdigit_l
jrand48
jrand48_r
kcalloc
kfree
km_destroy
km_init
km_init2
km_stat
km_stat_print
kmalloc
krealloc
krelocate
ks_ksmall_uint32_t
ksw_extd
ksw_extd2_sse
ksw_extf2_sse
ksw_exts2_sse
ksw_extz
NW-like extension
ksw_extz2_sse
ksw_gg
Global alignment
ksw_gg2
ksw_gg2_sse
ksw_ll_i16
ksw_ll_qinit
kt_for
kt_pipeline
l64a
labs
lchown
lcong48
lcong48_r
ldiv
link
linkat
llabs
lldiv
lockf
lrand48
lrand48_r
lseek
malloc
mblen
mbstowcs
mbtowc
memccpy
memchr
memcmp
memcpy
memmove
memset
mg_lchain_dp
mg_lchain_rmq
mkdtemp
mkstemp
mkstemps
mktemp
mm_align_skeleton
mm_bseq_close
mm_bseq_eof
mm_bseq_open
mm_bseq_read
mm_bseq_read2
mm_bseq_read3
mm_bseq_read_frag
mm_bseq_read_frag2
mm_chain_dp
mm_check_opt
mm_collect_matches
mm_err_fread
mm_err_fwrite
mm_err_puts
mm_est_err
mm_event_identity
mm_filter_regs
mm_filter_strand_retained
mm_gen_MD
mm_gen_cs
Generate the cs tag (new in 2.12)
mm_gen_regs
mm_hit_sort
mm_idx_alt_read
mm_idx_bed_junc
mm_idx_bed_read
mm_idx_build
mm_idx_cal_max_occ
mm_idx_destroy
Destroy/deallocate an index
mm_idx_dump
Append an index (or one part of a full index) to file
mm_idx_get
mm_idx_getseq
mm_idx_getseq2
mm_idx_index_name
mm_idx_is_idx
Check whether the file contains a minimap2 index
mm_idx_load
Load a part of an index
mm_idx_name2id
mm_idx_reader_close
Destroy/deallocate an index reader
mm_idx_reader_eof
mm_idx_reader_open
Initialize an index reader
mm_idx_reader_read
Read/build an index
mm_idx_stat
Print index statistics to stderr
mm_idx_str
Create an index from strings in memory
mm_idxopt_init
mm_map
Align a query sequence against an index
mm_map_file
Align a fasta/fastq file and print alignments to stdout
mm_map_file_frag
mm_map_frag
mm_mapopt_init
mm_mapopt_max_intron_len
mm_mapopt_update
Update mm_mapopt_t::mid_occ via mm_mapopt_t::mid_occ_frac
mm_mark_alt
mm_pair
mm_seed_mz_flt
mm_seg_free
mm_seg_gen
mm_select_sub
mm_select_sub_multi
mm_set_mapq
mm_set_opt
Set default or preset parameters
mm_set_parent
mm_set_sam_pri
mm_sketch
mm_split_init
mm_split_merge
mm_split_merge_prep
mm_split_reg
mm_split_rm_tmp
mm_squeeze_a
mm_sync_regs
mm_tbuf_destroy
Destroy/deallocate a thread-local buffer for mapping
mm_tbuf_get_km
mm_tbuf_init
Initialize a thread-local buffer for mapping
mm_update_dp_max
mm_write_paf
mm_write_paf3
mm_write_sam
mm_write_sam2
mm_write_sam3
mm_write_sam_hdr
mrand48
mrand48_r
nice
nrand48
nrand48_r
on_exit
open_memstream
pathconf
pause
pclose
peakrss
perror
pipe
popen
posix_memalign
pread
printf
profil
pselect
putc
putc_unlocked
putchar
putchar_unlocked
putenv
puts
putw
pwrite
qecvt
qecvt_r
qfcvt
qfcvt_r
qgcvt
qsort
quick_exit
radix_sort_64
radix_sort_128x
rand
rand_r
random
random_r
read
readlink
readlinkat
realloc
reallocarray
realpath
realtime
remove
rename
renameat
revoke
rewind
rindex
rmdir
rpmatch
sbrk
scanf
scanf1
sdust
sdust_buf_destroy
sdust_buf_init
sdust_core
seed48
seed48_r
select
setbuf
setbuffer
setdomainname
setegid
setenv
seteuid
setgid
sethostid
sethostname
setlinebuf
setlogin
setpgid
setpgrp
setregid
setreuid
setsid
setstate
setstate_r
setuid
setusershell
setvbuf
sleep
snprintf
sprintf
srand
srand48
srand48_r
srandom
srandom_r
sscanf
sscanf1
stpcpy
stpncpy
strcasecmp
strcasecmp_l
strcat
strchr
strcmp
strcoll
strcoll_l
strcpy
strcspn
strdup
strerror
strerror_l
strerror_r
strlen
strncasecmp
strncasecmp_l
strncat
strncmp
strncpy
strndup
strnlen
strpbrk
strrchr
strsep
strsignal
strspn
strstr
strtod
strtof
strtok
strtok_r
strtol
strtold
strtoll
strtoq
strtoul
strtoull
strtouq
strxfrm
strxfrm_l
symlink
symlinkat
sync
syscall
sysconf
system
tcgetpgrp
tcsetpgrp
tempnam
tmpfile
tmpnam
tmpnam_r
toascii
tolower
tolower_l
toupper
toupper_l
truncate
ttyname
ttyname_r
ttyslot
ualarm
uncompress
uncompress2
ungetc
unlink
unlinkat
unsetenv
usleep
valloc
vdprintf
vfork
vfprintf
vfscanf
vfscanf1
vhangup
vprintf
vscanf
vscanf1
vsnprintf
vsprintf
vsscanf
vsscanf1
wcstombs
wctomb
write
zError
zlibCompileFlags
zlibVersion

Type Aliases§

Byte
Bytef
FILE
_Float32
_Float64
_Float32x
_Float64x
_IO_lock_t
__FILE
__blkcnt64_t
__blkcnt_t
__blksize_t
__builtin_va_list
__caddr_t
__clock_t
__clockid_t
__compar_fn_t
__daddr_t
__dev_t
__fd_mask
__fpos64_t
__fpos_t
__fsblkcnt64_t
__fsblkcnt_t
__fsfilcnt64_t
__fsfilcnt_t
__fsword_t
__gid_t
__gnuc_va_list
__id_t
__ino64_t
__ino_t
__int8_t
__int16_t
__int32_t
__int64_t
__int_least8_t
__int_least16_t
__int_least32_t
__int_least64_t
__intmax_t
__intptr_t
__key_t
__locale_t
__loff_t
__mode_t
__nlink_t
__off64_t
__off_t
__pid_t
__pthread_list_t
__pthread_slist_t
__quad_t
__rlim64_t
__rlim_t
__sig_atomic_t
__socklen_t
__ssize_t
__suseconds64_t
__suseconds_t
__syscall_slong_t
__syscall_ulong_t
__thrd_t
__time_t
__timer_t
__tss_t
__u_char
__u_int
__u_long
__u_quad_t
__u_short
__uid_t
__uint8_t
__uint16_t
__uint32_t
__uint64_t
__uint_least8_t
__uint_least16_t
__uint_least32_t
__uint_least64_t
__uintmax_t
__useconds_t
_bindgen_ty_1
_bindgen_ty_2
_bindgen_ty_3
_bindgen_ty_4
alloc_func
blkcnt_t
blksize_t
caddr_t
charf
clock_t
clockid_t
daddr_t
dev_t
fd_mask
fpos_t
free_func
fsblkcnt_t
fsfilcnt_t
fsid_t
gid_t
gzFile
gz_header
gz_headerp
id_t
in_func
ino_t
int_fast8_t
int_fast16_t
int_fast32_t
int_fast64_t
int_least8_t
int_least16_t
int_least32_t
int_least64_t
intf
intmax_t
key_t
kh_cstr_t
khint32_t
khint64_t
khint_t
khiter_t
ksstr_t
kstring_t
locale_t
loff_t
mm_bseq_file_t
mm_tbuf_t
mode_t
nlink_t
off_t
out_func
pid_t
pthread_key_t
pthread_once_t
pthread_spinlock_t
pthread_t
quad_t
register_t
sdust_buf_t
sigset_t
socklen_t
suseconds_t
time_t
timer_t
uInt
uIntf
uLong
uLongf
u_char
u_int
u_int8_t
u_int16_t
u_int32_t
u_int64_t
u_long
u_quad_t
u_short
uid_t
uint
uint_fast8_t
uint_fast16_t
uint_fast32_t
uint_fast64_t
uint_least8_t
uint_least16_t
uint_least32_t
uint_least64_t
uintmax_t
ulong
useconds_t
ushort
va_list
voidp
voidpc
voidpf
wchar_t
z_crc_t
z_size_t
z_stream
z_streamp

Unions§

__atomic_wide_counter
__mbstate_t__bindgen_ty_1
mm_idx_reader_t__bindgen_ty_1
pthread_attr_t
pthread_barrier_t
pthread_barrierattr_t
pthread_cond_t
pthread_condattr_t
pthread_mutex_t
pthread_mutexattr_t
pthread_rwlock_t
pthread_rwlockattr_t