Expand description
Low-level FFI bindings to minibwa. Generated by bindgen; see build.rs.
Structs§
Constants§
- MB_
CIGAR_ DEL - MB_
CIGAR_ EQ_ MATCH - MB_
CIGAR_ HARDCLIP - MB_
CIGAR_ INS - MB_
CIGAR_ MATCH - MB_
CIGAR_ N_ SKIP - MB_
CIGAR_ PADDING - MB_
CIGAR_ SOFTCLIP - MB_
CIGAR_ STR - MB_
CIGAR_ X_ MISMATCH - MB_
F_ 2ND_ SEQ - MB_
F_ ADAP - MB_
F_ COPY_ COMMENT - MB_
F_ EQX - MB_
F_ LONG - MB_
F_ METH - MB_
F_ NO_ ALN - MB_
F_ NO_ KALLOC - MB_
F_ NO_ PAIRING - MB_
F_ NO_ UNMAP - MB_
F_ PAF - MB_F_PE
- MB_
F_ PE_ PREDEF - MB_
F_ PRIMAR Y5 - MB_
F_ SUPP_ SOFT - MB_
F_ WRITE_ CS - MB_
F_ WRITE_ DS - MB_
F_ WRITE_ MD - MB_
PARENT_ TMP_ PRI - MB_
PARENT_ UNSET - MB_
VERSION
Functions§
- mb_
idx_ ⚠ctg_ len - mb_
idx_ ⚠ctg_ name - mb_
idx_ ⚠destroy - mb_
idx_ ⚠load - mb_
index_ ⚠build - mb_map⚠
- Align one sequence
- mb_
map_ ⚠batch - Align a set of sequences in batch
- mb_
opt_ ⚠init - mb_
opt_ ⚠preset - mb_
shim_ ⚠align_ opt - mb_
shim_ ⚠align_ opt_ ovr - mb_
shim_ ⚠anchor - mb_
shim_ ⚠bwt_ cnt_ table - mb_
shim_ ⚠bwt_ data - mb_
shim_ ⚠bwt_ data_ len - mb_
shim_ ⚠bwt_ l2 - mb_
shim_ ⚠bwt_ n_ sa - mb_
shim_ ⚠bwt_ primary - mb_
shim_ ⚠bwt_ sa - mb_
shim_ ⚠bwt_ sa_ bit - mb_
shim_ ⚠bwt_ seq_ len - mb_
shim_ ⚠extd2 - mb_
shim_ ⚠extz2 - mb_
shim_ ⚠gap_ penalty - mb_
shim_ ⚠getseq - mb_
shim_ ⚠ksw_ ll - mb_
shim_ ⚠last_ error - mb_
shim_ ⚠lchain_ dp - mb_
shim_ ⚠map - mb_
shim_ ⚠map_ bench - mb_
shim_ ⚠map_ hits - mb_
shim_ ⚠map_ meth - mb_
shim_ ⚠map_ meth_ sam - mb_
shim_ ⚠map_ regions - mb_
shim_ ⚠map_ sam - mb_
shim_ ⚠pair - mb_
shim_ ⚠pair_ meth - mb_
shim_ ⚠pair_ meth_ sam - mb_
shim_ ⚠pair_ sam - mb_
shim_ ⚠pestat - mb_
shim_ ⚠sam_ hdr - mb_
shim_ ⚠seed_ bench - mb_
shim_ ⚠seed_ intv - mb_
tbuf_ ⚠destroy - mb_
tbuf_ ⚠init - mb_
tbuf_ ⚠reset