Expand description
The aim of this crate is to provide Microbiology friendly Rust functions for bioinformatics.
With the genbank parser, you are able to parse a genbank format file, then write into gff3 format
It is also possible to print the DNA sequences extracted from the coding sequences (genes, ffn format), plus the protein fasta sequences (faa format).
Additionally, you can create new features and records and save them either in genbank or gff3 format
Modules§
- align
- A Multiple Sequence Alignment parser (MSA)
- blast
- async streaming BLAST parsers for the (outfmt 6 and outfmt 5), gzip-transparent reader, option of –json streaming output
- embl
- An EMBL format to GFF parser
- gbk
- A Genbank to GFF parser
- record
Macros§
- create_
builder - macro to create the set_ functions for the values in a Builder format
- create_
getters - macro to create get_ functions for the values
- embl
- genbank