Struct SequenceAttributeBuilder 

pub struct SequenceAttributeBuilder {
    pub seq_attributes: BTreeMap<String, HashSet<SequenceAttributes>>,
    pub locus_tag: Option<String>,
}

builder for the sequence information on a per coding sequence (CDS) basis

Fields

seq_attributes: BTreeMap<String, HashSet<SequenceAttributes>>

locus_tag: Option<String>

Implementations

impl SequenceAttributeBuilder

pub fn get_start(&self, key: &str) -> Option<&RangeValue>

pub fn get_stop(&self, key: &str) -> Option<&RangeValue>

pub fn get_sequence_ffn(&self, key: &str) -> Option<&String>

pub fn get_sequence_faa(&self, key: &str) -> Option<&String>

pub fn get_codon_start(&self, key: &str) -> Option<&u8>

pub fn get_strand(&self, key: &str) -> Option<&i8>

impl SequenceAttributeBuilder

pub fn new() -> Self

pub fn set_counter(&mut self, counter: String) -> &mut Self

pub fn insert_to(&mut self, value: SequenceAttributes)

pub fn set_start(&mut self, value: RangeValue) -> &mut Self

pub fn set_stop(&mut self, value: RangeValue) -> &mut Self

pub fn set_sequence_ffn(&mut self, value: String) -> &mut Self

pub fn set_sequence_faa(&mut self, value: String) -> &mut Self

pub fn set_codon_start(&mut self, value: u8) -> &mut Self

pub fn set_strand(&mut self, value: i8) -> &mut Self

pub fn build(self) -> BTreeMap<String, HashSet<SequenceAttributes>>

pub fn iter_sorted(&self) -> Iter<'_, String, HashSet<SequenceAttributes>>

pub fn default() -> Self

Trait Implementations

impl Clone for SequenceAttributeBuilder

fn clone(&self) -> SequenceAttributeBuilder

Returns a duplicate of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Debug for SequenceAttributeBuilder

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl Default for SequenceAttributeBuilder

fn default() -> SequenceAttributeBuilder

Returns the “default value” for a type.