Struct HomologyRegion 

pub struct HomologyRegion {
    pub start1: i32,
    pub end1: i32,
    pub start2: i32,
    pub end2: i32,
    pub opt: f64,
    pub overlapaa: i32,
    pub extended: bool,
    pub importance: f64,
    pub rimportance: f64,
    pub korh: u8,
    pub nokori: i32,
}

A single local homology region between two sequences.

Replaces the C LocalHom linked-list node with a plain struct. Collections of these are stored in a Vec rather than a linked list.

Fields

start1: i32

Start position in sequence 1.

end1: i32

End position in sequence 1.

start2: i32

Start position in sequence 2.

end2: i32

End position in sequence 2.

opt: f64

Optimal alignment score for this region.

overlapaa: i32

Overlap in amino acids.

extended: bool

Whether this region was extended.

importance: f64

Importance weight (used in consistency scoring).

rimportance: f64

Reverse importance weight.

korh: u8

‘k’ (keep) or ‘h’ (homolog) classification.

nokori: i32

Remaining count.

Trait Implementations

impl Clone for HomologyRegion

fn clone(&self) -> HomologyRegion

Returns a duplicate of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Debug for HomologyRegion

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl Default for HomologyRegion

fn default() -> Self

Returns the “default value” for a type.

impl PartialEq for HomologyRegion

fn eq(&self, other: &HomologyRegion) -> bool

Equality operator ==.

fn ne(&self, other: &Rhs) -> bool

Inequality operator !=.

impl StructuralPartialEq for HomologyRegion