Struct LocalHomologyTable 

pub struct LocalHomologyTable {
    pub nseq: usize,
    /* private fields */
}

Table of pairwise local homology information.

Replaces the C LocalHom **localhomtable (njob x njob linked lists) with a flat map keyed by sequence pair indices.

Fields

nseq: usize

Number of sequences.

Implementations

impl LocalHomologyTable

pub fn new(nseq: usize) -> Self

pub fn get(&self, i: usize, j: usize) -> &[HomologyRegion]

Get homology regions between sequences i and j.

pub fn get_mut(&mut self, i: usize, j: usize) -> &mut Vec<HomologyRegion>

Get mutable homology regions between sequences i and j.

pub fn push(&mut self, i: usize, j: usize, region: HomologyRegion)

Add a homology region between sequences i and j.

Trait Implementations

impl Clone for LocalHomologyTable

fn clone(&self) -> LocalHomologyTable

Returns a duplicate of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Debug for LocalHomologyTable

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl Default for LocalHomologyTable

fn default() -> LocalHomologyTable

Returns the “default value” for a type.