Crate mafft_types 

Pure Rust equivalents of MAFFT’s core C data structures.

These types use idiomatic Rust (Vec, Option, enums) instead of raw pointers and linked lists.

Re-exports

pub use fp::fmadd;

pub use fp::CONTRACTS_FMA;

Modules

fp

Floating-point contraction policy: mirror the reference C build of the target you run on.

Structs

AlignmentSegment

An aligned segment region.

GapPenalties

Gap penalty parameters.

HomologyRegion

A single local homology region between two sequences.

LocalHomologyTable

Table of pairwise local homology information.

RnaBasePair

An RNA base pair probability.

ScoringContext

The complete scoring context needed by alignment algorithms.

SegmentPair

A pair of segments from two groups being aligned.

Sequence

A named biological sequence.

SequenceSet

A collection of sequences to be aligned.

Enums

ScoringModel

Which substitution matrix model to use.

SeqType

The type of biological sequences being aligned.

Type Aliases

Complex64

Complex number type for FFT computation.