Struct Hat2Matrix 

pub struct Hat2Matrix {
    pub names: Vec<String>,
    pub distances: Vec<Vec<f64>>,
}

MAFFT’s hat2 distance matrix format.

Stores an upper-triangular pairwise distance matrix with sequence names. The on-disk format is:

1
   <nseq>
 <scaled_max>
   1. name1
   2. name2
   ...
<d(0,1)> <d(0,2)> ... (12 per line, 6-char fixed-width fields)
<d(1,2)> <d(1,3)> ...

Fields

names: Vec<String>

Sequence names.

distances: Vec<Vec<f64>>

Upper-triangular distances: distances[i][j] is the distance between sequence i and sequence i + j + 1. So row i has nseq - i - 1 elements.

Implementations

impl Hat2Matrix

pub fn nseq(&self) -> usize

pub fn get(&self, i: usize, j: usize) -> f64

Get distance between sequences i and j (i != j).

Trait Implementations

impl Clone for Hat2Matrix

fn clone(&self) -> Hat2Matrix

Returns a duplicate of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Debug for Hat2Matrix

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.