Enum AlignmentMode 

pub enum AlignmentMode {
    FftNs2,
    FftNsi {
        iterations: usize,
    },
    GInsi {
        iterations: usize,
    },
    LInsi {
        iterations: usize,
    },
    EInsi {
        iterations: usize,
    },
    QInsi {
        iterations: usize,
    },
    XInsi {
        iterations: usize,
    },
}

Alignment mode (strategy).

Variants

FftNs2

FFT-NS-2: fast progressive (default).

FftNsi

FFT-NS-i: progressive + limited iterative refinement.

Fields

iterations: usize

GInsi

G-INS-i: global alignment + iterative refinement.

Fields

iterations: usize

LInsi

L-INS-i: local alignment + iterative refinement.

Fields

iterations: usize

EInsi

E-INS-i: generalized affine + iterative refinement.

Fields

iterations: usize

QInsi

Q-INS-i: RNA alignment with McCaskill base-pair probabilities.

Fields

iterations: usize

XInsi

X-INS-i: RNA alignment with CONTRAfold structure predictions.

Fields

iterations: usize

Trait Implementations

impl Clone for AlignmentMode

fn clone(&self) -> AlignmentMode

Returns a duplicate of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Debug for AlignmentMode

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl Default for AlignmentMode

fn default() -> Self

Returns the “default value” for a type.