ReferenceReaderUtils

lorikeet_genome::reference::reference_reader_utils

Struct ReferenceReaderUtils

pub struct ReferenceReaderUtils {}

Implementations§

impl ReferenceReaderUtils

pub fn retrieve_reference( concatenated_genomes: &Option<String>, ) -> IndexedReader<File>

pub fn extract_genome<'a>( tid: u32, target_names: &'a Vec<&[u8]>, split_char: u8, ) -> &'a [u8] ⓘ

pub fn split_contig_name(target_name: &Vec<u8>) -> String

pub fn setup_genome_fasta_files( m: &ArgMatches, ) -> (Option<NamedTempFile>, Option<GenomesAndContigs>)

pub fn parse_references(m: &ArgMatches) -> Vec<String>

pub fn extract_genomes_and_contigs_option( m: &ArgMatches, genome_fasta_files: &Vec<&str>, ) -> Option<GenomesAndContigs>

pub fn generate_faidx(reference_path: &str) -> IndexedReader<File>

Auto Trait Implementations§

impl Freeze for ReferenceReaderUtils

impl RefUnwindSafe for ReferenceReaderUtils

impl Send for ReferenceReaderUtils

impl Sync for ReferenceReaderUtils

impl Unpin for ReferenceReaderUtils

impl UnwindSafe for ReferenceReaderUtils

Blanket Implementations§

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