Struct ByteArrayAllele 

pub struct ByteArrayAllele { /* private fields */ }

Implementations

impl ByteArrayAllele

pub const NO_CALL: char = '.'

pub const SPAN_DEL: char = '*'

pub fn new(bases: &[u8], is_ref: bool) -> ByteArrayAllele

pub fn is_span_del(&self) -> bool

pub fn len(&self) -> usize

pub fn fake(is_ref: bool) -> ByteArrayAllele

pub fn create_fake_alleles() -> Vec<ByteArrayAllele>

pub fn no_call() -> ByteArrayAllele

pub fn extend(left: &ByteArrayAllele, right: &[u8]) -> ByteArrayAllele

pub fn would_be_null_allele(bases: &[u8]) -> bool

pub fn would_be_no_call_allele(bases: &[u8]) -> bool

pub fn would_be_star_allele(bases: &[u8]) -> bool

pub fn would_be_symbolic_allele(bases: &[u8]) -> bool

pub fn would_be_breakpoint(bases: &[u8]) -> bool

pub fn would_be_single_breakend(bases: &[u8]) -> bool

pub fn acceptable_allele_bases(bases: &[u8], is_ref: bool) -> bool

Trait Implementations

impl Allele for ByteArrayAllele

fn is_reference(&self) -> bool

fn length(&self) -> usize

fn is_symbolic(&self) -> bool

fn is_called(&self) -> bool

fn is_no_call(&self) -> bool

fn get_bases(&self) -> &[u8]

fn no_call() -> Self

fn bases_match(&self, other: &[u8]) -> bool

impl Clone for ByteArrayAllele

fn clone(&self) -> ByteArrayAllele

Returns a duplicate of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Debug for ByteArrayAllele

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl Hash for ByteArrayAllele

fn hash<H: Hasher>(&self, state: &mut H)

Feeds this value into the given Hasher.

fn hash_slice<H>(data: &[Self], state: &mut H)

where H: Hasher, Self: Sized,

Feeds a slice of this type into the given Hasher.

impl Ord for ByteArrayAllele

fn cmp(&self, other: &ByteArrayAllele) -> Ordering

This method returns an Ordering between self and other.

fn max(self, other: Self) -> Self

where Self: Sized,

Compares and returns the maximum of two values.

fn min(self, other: Self) -> Self

where Self: Sized,

Compares and returns the minimum of two values.

fn clamp(self, min: Self, max: Self) -> Self

where Self: Sized,

Restrict a value to a certain interval.

impl PartialEq for ByteArrayAllele

fn eq(&self, other: &Self) -> bool

Tests for self and other values to be equal, and is used by ==.

fn ne(&self, other: &Rhs) -> bool

Tests for !=. The default implementation is almost always sufficient, and should not be overridden without very good reason.

impl PartialOrd for ByteArrayAllele

fn partial_cmp(&self, other: &ByteArrayAllele) -> Option<Ordering>

This method returns an ordering between self and other values if one exists.

fn lt(&self, other: &Rhs) -> bool

Tests less than (for self and other) and is used by the < operator.

fn le(&self, other: &Rhs) -> bool

Tests less than or equal to (for self and other) and is used by the <= operator.

fn gt(&self, other: &Rhs) -> bool

Tests greater than (for self and other) and is used by the > operator.

fn ge(&self, other: &Rhs) -> bool

Tests greater than or equal to (for self and other) and is used by the >= operator.

impl Eq for ByteArrayAllele