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MArrayLM

limma::fit

Struct MArrayLM 

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pub struct MArrayLM {
Show 21 fields
    pub coefficients: Array2<f64>,
    pub stdev_unscaled: Array2<f64>,
    pub sigma: Array1<f64>,
    pub df_residual: Array1<f64>,
    pub cov_coefficients: Array2<f64>,
    pub gene_names: Vec<String>,
    pub coef_names: Vec<String>,
    pub amean: Array1<f64>,
    pub design: Option<Array2<f64>>,
    pub contrasts: Option<Array2<f64>>,
    pub df_prior: Option<Array1<f64>>,
    pub s2_prior: Option<Array1<f64>>,
    pub var_prior: Option<Array1<f64>>,
    pub proportion: Option<f64>,
    pub s2_post: Option<Array1<f64>>,
    pub t: Option<Array2<f64>>,
    pub df_total: Option<Array1<f64>>,
    pub p_value: Option<Array2<f64>>,
    pub lods: Option<Array2<f64>>,
    pub f_stat: Option<Array1<f64>>,
    pub f_p_value: Option<Array1<f64>>,

}
Expand description

Result of fitting gene-wise linear models. Port of MArrayLM.

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§coefficients: Array2<f64>§stdev_unscaled: Array2<f64>§sigma: Array1<f64>§df_residual: Array1<f64>§cov_coefficients: Array2<f64>§gene_names: Vec<String>§coef_names: Vec<String>§amean: Array1<f64>§design: Option<Array2<f64>>§contrasts: Option<Array2<f64>>§df_prior: Option<Array1<f64>>§s2_prior: Option<Array1<f64>>§var_prior: Option<Array1<f64>>§proportion: Option<f64>§s2_post: Option<Array1<f64>>§t: Option<Array2<f64>>§df_total: Option<Array1<f64>>§p_value: Option<Array2<f64>>§lods: Option<Array2<f64>>§f_stat: Option<Array1<f64>>§f_p_value: Option<Array1<f64>>

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impl MArrayLM

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pub fn n_genes(&self) -> usize

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pub fn n_coef(&self) -> usize

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pub fn fitted(&self) -> Result<Array2<f64>>

fitted.MArrayLM: fitted values coefficients %*% t(design) (n_genes x n_samples).

Errors if the fit holds contrasts (its coefficients are contrasts rather than the original coefficients) or carries no design matrix.

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pub fn residuals(&self, y: &Array2<f64>) -> Result<Array2<f64>>

residuals.MArrayLM: observed minus fitted values, y - fitted.

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impl Clone for MArrayLM

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fn clone(&self) -> MArrayLM

Returns a duplicate of the value. Read more
1.0.0 (const: unstable) · Source§

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source. Read more
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impl Debug for MArrayLM

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fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter. Read more

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unsafe fn clone_to_uninit(&self, dest: *mut u8)

🔬This is a nightly-only experimental API. (clone_to_uninit)
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