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DiffSplice

limma::diffsplice

Struct DiffSplice 

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pub struct DiffSplice {
Show 20 fields
    pub coef_names: Vec<String>,
    pub exon_id: Vec<String>,
    pub exon_geneid: Vec<String>,
    pub exon_gene_index: Vec<usize>,
    pub coefficients: Array2<f64>,
    pub t: Array2<f64>,
    pub p_value: Array2<f64>,
    pub gene_id: Vec<String>,
    pub gene_nexons: Vec<usize>,
    pub gene_df_prior: Array1<f64>,
    pub gene_df_residual: Array1<f64>,
    pub gene_df_total: Array1<f64>,
    pub gene_s2: Array1<f64>,
    pub gene_s2_post: Array1<f64>,
    pub gene_f: Array2<f64>,
    pub gene_f_p_value: Array2<f64>,
    pub gene_simes_p_value: Array2<f64>,
    pub gene_bonferroni_p_value: Array2<f64>,
    pub gene_firstexon: Vec<usize>,
    pub gene_lastexon: Vec<usize>,

}
Expand description

Result of diff_splice. Exon-level fields have one row per kept exon (exons belonging to genes with at least two exons), in gene-sorted order; gene-level fields have one row per kept gene.

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§coef_names: Vec<String>§exon_id: Vec<String>

Exon identifier per kept exon (defaults to the 1-based original row index).

§exon_geneid: Vec<String>

Gene identifier per kept exon.

§exon_gene_index: Vec<usize>

0-based index into the kept-gene arrays for each kept exon.

§coefficients: Array2<f64>

Leverage-adjusted exon log-fold-changes (relative to the gene average).

§t: Array2<f64>

Exon moderated t-statistics.

§p_value: Array2<f64>

Two-sided exon p-values.

§gene_id: Vec<String>§gene_nexons: Vec<usize>§gene_df_prior: Array1<f64>§gene_df_residual: Array1<f64>§gene_df_total: Array1<f64>§gene_s2: Array1<f64>§gene_s2_post: Array1<f64>§gene_f: Array2<f64>

Gene-level F-statistics (one column per coefficient).

§gene_f_p_value: Array2<f64>§gene_simes_p_value: Array2<f64>§gene_bonferroni_p_value: Array2<f64>§gene_firstexon: Vec<usize>

0-based first/last (inclusive) kept-exon row index for each kept gene.

§gene_lastexon: Vec<usize>

Trait Implementations§

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impl Clone for DiffSplice

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fn clone(&self) -> DiffSplice

Returns a duplicate of the value. Read more
1.0.0 (const: unstable) · Source§

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source. Read more
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impl Debug for DiffSplice

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fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter. Read more

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🔬This is a nightly-only experimental API. (clone_to_uninit)
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