Struct lightmotif::abc::Protein

pub struct Protein;

The standard protein alphabet composed of 20 residues and a wildcard.

Trait Implementations

impl Alphabet for Protein

type Symbol = AminoAcid

type K = UInt<UInt<UInt<UInt<UInt<UTerm, B1>, B0>, B1>, B0>, B1>

fn symbols() -> &'static [AminoAcid]

Get all the symbols of this alphabet.

fn as_str() -> &'static str

Get a string with all symbols from this alphabet.

fn default_symbol() -> Self::Symbol

Get the default symbol for this alphabet.

impl Clone for Protein

fn clone(&self) -> Protein

Returns a copy of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Debug for Protein

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl Default for Protein

fn default() -> Protein

Returns the “default value” for a type.

impl PartialEq for Protein

fn eq(&self, other: &Protein) -> bool

This method tests for self and other values to be equal, and is used by ==.

fn ne(&self, other: &Rhs) -> bool

This method tests for !=. The default implementation is almost always sufficient, and should not be overridden without very good reason.

impl Score<Protein, <Avx2 as Backend>::LANES> for Pipeline<Protein, Avx2>

fn score_into<S, M>( &self, seq: S, pssm: M, scores: &mut StripedScores<<Avx2 as Backend>::LANES> )

where S: AsRef<StripedSequence<Protein, <Avx2 as Backend>::LANES>>, M: AsRef<ScoringMatrix<Protein>>,

Compute the PSSM scores into the given striped score matrix.

fn score<S, M>(&self, seq: S, pssm: M) -> StripedScores<C>

where S: AsRef<StripedSequence<A, C>>, M: AsRef<ScoringMatrix<A>>,

Compute the PSSM scores for every sequence positions.

impl Score<Protein, <Dispatch as Backend>::LANES> for Pipeline<Protein, Dispatch>

fn score_into<S, M>( &self, seq: S, pssm: M, scores: &mut StripedScores<<Dispatch as Backend>::LANES> )

where S: AsRef<StripedSequence<Protein, <Dispatch as Backend>::LANES>>, M: AsRef<ScoringMatrix<Protein>>,

Compute the PSSM scores into the given striped score matrix.

fn score<S, M>(&self, seq: S, pssm: M) -> StripedScores<C>

where S: AsRef<StripedSequence<A, C>>, M: AsRef<ScoringMatrix<A>>,

Compute the PSSM scores for every sequence positions.

impl Copy for Protein

impl Eq for Protein

impl StructuralEq for Protein

impl StructuralPartialEq for Protein