pub struct StripedScores { /* private fields */ }
Expand description
A striped matrix storing scores obtained with a scoring matrix.
Implementations§
Source§impl StripedScores
impl StripedScores
Sourcepub fn threshold(slf: PyRef<'_, Self>, threshold: f32) -> Vec<usize>
pub fn threshold(slf: PyRef<'_, Self>, threshold: f32) -> Vec<usize>
Return all positions with a score greater or equal to the threshold.
Returns:
list
of int
: The indices of the position with a score greater or
equal to the given threshold. Note that the indices may or may not
be sorted, depending on the implementation.
Note: This method uses the best implementation for the local platform, prefering AVX2 if available.
Trait Implementations§
Source§impl Clone for StripedScores
impl Clone for StripedScores
Source§fn clone(&self) -> StripedScores
fn clone(&self) -> StripedScores
Returns a copy of the value. Read more
1.0.0 · Source§fn clone_from(&mut self, source: &Self)
fn clone_from(&mut self, source: &Self)
Performs copy-assignment from
source
. Read moreSource§impl Debug for StripedScores
impl Debug for StripedScores
Source§impl From<StripedScores<f32>> for StripedScores
impl From<StripedScores<f32>> for StripedScores
Source§fn from(scores: StripedScores<f32>) -> Self
fn from(scores: StripedScores<f32>) -> Self
Converts to this type from the input type.
Source§impl<'py> IntoPyObject<'py> for StripedScores
impl<'py> IntoPyObject<'py> for StripedScores
Source§type Target = StripedScores
type Target = StripedScores
The Python output type
Source§type Output = Bound<'py, <StripedScores as IntoPyObject<'py>>::Target>
type Output = Bound<'py, <StripedScores as IntoPyObject<'py>>::Target>
The smart pointer type to use. Read more
Source§fn into_pyobject(
self,
py: Python<'py>,
) -> Result<<Self as IntoPyObject<'_>>::Output, <Self as IntoPyObject<'_>>::Error>
fn into_pyobject( self, py: Python<'py>, ) -> Result<<Self as IntoPyObject<'_>>::Output, <Self as IntoPyObject<'_>>::Error>
Performs the conversion.
Source§impl PyClass for StripedScores
impl PyClass for StripedScores
Source§impl PyClassImpl for StripedScores
impl PyClassImpl for StripedScores
Source§const IS_BASETYPE: bool = false
const IS_BASETYPE: bool = false
#[pyclass(subclass)]
Source§const IS_SUBCLASS: bool = false
const IS_SUBCLASS: bool = false
#[pyclass(extends=…)]
Source§const IS_MAPPING: bool = false
const IS_MAPPING: bool = false
#[pyclass(mapping)]
Source§const IS_SEQUENCE: bool = true
const IS_SEQUENCE: bool = true
#[pyclass(sequence)]
Source§type ThreadChecker = SendablePyClass<StripedScores>
type ThreadChecker = SendablePyClass<StripedScores>
This handles following two situations: Read more
Source§type PyClassMutability = <<PyAny as PyClassBaseType>::PyClassMutability as PyClassMutability>::MutableChild
type PyClassMutability = <<PyAny as PyClassBaseType>::PyClassMutability as PyClassMutability>::MutableChild
Immutable or mutable
Source§type BaseNativeType = PyAny
type BaseNativeType = PyAny
The closest native ancestor. This is
PyAny
by default, and when you declare
#[pyclass(extends=PyDict)]
, it’s PyDict
.fn items_iter() -> PyClassItemsIter
fn lazy_type_object() -> &'static LazyTypeObject<Self>
fn dict_offset() -> Option<isize>
fn weaklist_offset() -> Option<isize>
Source§impl<'a, 'py> PyFunctionArgument<'a, 'py> for &'a StripedScores
impl<'a, 'py> PyFunctionArgument<'a, 'py> for &'a StripedScores
Source§impl<'a, 'py> PyFunctionArgument<'a, 'py> for &'a mut StripedScores
impl<'a, 'py> PyFunctionArgument<'a, 'py> for &'a mut StripedScores
Source§impl PyMethods<StripedScores> for PyClassImplCollector<StripedScores>
impl PyMethods<StripedScores> for PyClassImplCollector<StripedScores>
fn py_methods(self) -> &'static PyClassItems
Source§impl PyTypeInfo for StripedScores
impl PyTypeInfo for StripedScores
Source§fn type_object_raw(py: Python<'_>) -> *mut PyTypeObject
fn type_object_raw(py: Python<'_>) -> *mut PyTypeObject
Returns the PyTypeObject instance for this type.
Source§fn type_object(py: Python<'_>) -> Bound<'_, PyType>
fn type_object(py: Python<'_>) -> Bound<'_, PyType>
Returns the safe abstraction over the type object.
Source§fn type_object_bound(py: Python<'_>) -> Bound<'_, PyType>
fn type_object_bound(py: Python<'_>) -> Bound<'_, PyType>
👎Deprecated since 0.23.0: renamed to
PyTypeInfo::type_object
Deprecated name for
PyTypeInfo::type_object
.Source§fn is_type_of(object: &Bound<'_, PyAny>) -> bool
fn is_type_of(object: &Bound<'_, PyAny>) -> bool
Checks if
object
is an instance of this type or a subclass of this type.Source§fn is_type_of_bound(object: &Bound<'_, PyAny>) -> bool
fn is_type_of_bound(object: &Bound<'_, PyAny>) -> bool
👎Deprecated since 0.23.0: renamed to
PyTypeInfo::is_type_of
Deprecated name for
PyTypeInfo::is_type_of
.Source§fn is_exact_type_of(object: &Bound<'_, PyAny>) -> bool
fn is_exact_type_of(object: &Bound<'_, PyAny>) -> bool
Checks if
object
is an instance of this type.Source§fn is_exact_type_of_bound(object: &Bound<'_, PyAny>) -> bool
fn is_exact_type_of_bound(object: &Bound<'_, PyAny>) -> bool
👎Deprecated since 0.23.0: renamed to
PyTypeInfo::is_exact_type_of
Deprecated name for
PyTypeInfo::is_exact_type_of
.impl DerefToPyAny for StripedScores
Auto Trait Implementations§
impl Freeze for StripedScores
impl RefUnwindSafe for StripedScores
impl Send for StripedScores
impl Sync for StripedScores
impl Unpin for StripedScores
impl UnwindSafe for StripedScores
Blanket Implementations§
Source§impl<T> BorrowMut<T> for Twhere
T: ?Sized,
impl<T> BorrowMut<T> for Twhere
T: ?Sized,
Source§fn borrow_mut(&mut self) -> &mut T
fn borrow_mut(&mut self) -> &mut T
Mutably borrows from an owned value. Read more
Source§impl<T> CloneToUninit for Twhere
T: Clone,
impl<T> CloneToUninit for Twhere
T: Clone,
Source§impl<T> FromPyObject<'_> for T
impl<T> FromPyObject<'_> for T
Source§impl<'py, T> FromPyObjectBound<'_, 'py> for Twhere
T: FromPyObject<'py>,
impl<'py, T> FromPyObjectBound<'_, 'py> for Twhere
T: FromPyObject<'py>,
Source§impl<'py, T> IntoPyObjectExt<'py> for Twhere
T: IntoPyObject<'py>,
impl<'py, T> IntoPyObjectExt<'py> for Twhere
T: IntoPyObject<'py>,
Source§fn into_bound_py_any(self, py: Python<'py>) -> Result<Bound<'py, PyAny>, PyErr>
fn into_bound_py_any(self, py: Python<'py>) -> Result<Bound<'py, PyAny>, PyErr>
Converts
self
into an owned Python object, dropping type information.