Struct SufrFile

pub struct SufrFile<T>
where
    T: Int + FromUsize<T> + Sized + Send + Sync + Serialize,
{

    pub filename: String,
    pub version: u8,
    pub is_dna: bool,
    pub text_pos: usize,
    pub suffix_array_pos: usize,
    pub lcp_pos: usize,
    pub max_query_len: T,
    pub len: T,
    pub num_suffixes: T,
    pub num_sequences: T,
    pub sequence_starts: Vec<T>,
    pub headers: Vec<String>,
    pub text: Vec<u8>,
    pub suffix_array: FileAccess<T>,
    pub lcp: FileAccess<T>,
}

Fields

filename: String

version: u8

is_dna: bool

text_pos: usize

suffix_array_pos: usize

lcp_pos: usize

max_query_len: T

len: T

num_suffixes: T

num_sequences: T

sequence_starts: Vec<T>

headers: Vec<String>

text: Vec<u8>

suffix_array: FileAccess<T>

lcp: FileAccess<T>

Implementations

impl<T> SufrFile<T>

where T: Int + FromUsize<T> + Sized + Send + Sync,

pub fn read(filename: &str) -> Result<SufrFile<T>>

pub fn check_suffix_array(&mut self) -> Result<Vec<usize>>

pub fn string_at(&self, pos: usize, len: Option<usize>) -> String

pub fn search( &mut self, queries: &[String], _max_query_len: Option<usize>, ) -> Result<Vec<SearchResult>>

pub fn compare( &self, query: &[u8], suffix_pos: usize, skip: usize, ) -> Comparison

Trait Implementations

impl<T> Debug for SufrFile<T>

where T: Int + FromUsize<T> + Sized + Send + Sync + Serialize + Debug,

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.