Struct Trace 

pub struct Trace {
    pub length: usize,
    pub profile_length: usize,
    pub target_length: usize,
    pub states: Vec<usize>,
    pub profile_indices: Vec<usize>,
    pub target_indices: Vec<usize>,
    pub posterior_probabilities: Vec<f32>,
    pub cell_fraction: f32,
}

Fields

length: usize

profile_length: usize

target_length: usize

states: Vec<usize>

profile_indices: Vec<usize>

target_indices: Vec<usize>

posterior_probabilities: Vec<f32>

cell_fraction: f32

Implementations

impl Trace

pub const TRACE_IDX_TO_NAME: [&'static str; 12]

pub const INVALID_STATE: usize = 0usize

pub const M_STATE: usize = 1usize

pub const D_STATE: usize = 2usize

pub const I_STATE: usize = 3usize

pub const S_STATE: usize = 4usize

pub const N_STATE: usize = 5usize

pub const B_STATE: usize = 6usize

pub const E_STATE: usize = 7usize

pub const C_STATE: usize = 8usize

pub const T_STATE: usize = 9usize

pub const J_STATE: usize = 10usize

pub const X_STATE: usize = 11usize

pub fn iter(&self) -> IntoIter<TraceStep>

pub fn core_iter(&self) -> IntoIter<TraceStep>

pub fn get(&self, idx: usize) -> Option<TraceStep>

pub fn core_len(&self) -> usize

pub fn first_core(&self) -> Option<TraceStep>

pub fn last_core(&self) -> Option<TraceStep>

pub fn new(target_length: usize, profile_length: usize) -> Self

pub fn resize(&mut self, new_target_length: usize, new_profile_length: usize)

pub fn append_with_posterior_probability( &mut self, state: usize, target_idx: usize, profile_idx: usize, posterior_probability: f32, )

pub fn reverse(&mut self)

pub fn dump( &self, out: &mut impl Write, profile: &Profile, target: &Sequence, ) -> Result<()>

Trait Implementations

impl Default for Trace

fn default() -> Trace

Returns the “default value” for a type.