Struct DpMatrixSparse 

pub struct DpMatrixSparse {
    pub target_length: usize,
    pub profile_length: usize,
    pub target_start: usize,
    pub target_end: usize,
    pub block_offsets: Vec<usize>,
    pub row_start_offsets: Vec<usize>,
    pub core_data: Vec<f32>,
    pub special_data: Vec<f32>,
}

Fields

target_length: usize

profile_length: usize

target_start: usize

target_end: usize

block_offsets: Vec<usize>

These point to the start of each “row block” in the core_data vector. They are absolute in the sense that they are not relative to the logical non-sparse matrix coordinate space.

row_start_offsets: Vec<usize>

These indicate when a row “starts” in the logical non-sparse matrix coordinate space.

core_data: Vec<f32>

special_data: Vec<f32>

Implementations

impl DpMatrixSparse

pub fn new( target_length: usize, profile_length: usize, row_bounds: &RowBounds, ) -> Self

pub fn reset(&mut self)

pub fn reuse( &mut self, new_target_length: usize, new_profile_length: usize, row_bounds: &RowBounds, )

Trait Implementations

impl Clone for DpMatrixSparse

fn clone(&self) -> DpMatrixSparse

Returns a duplicate of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Default for DpMatrixSparse

fn default() -> DpMatrixSparse

Returns the “default value” for a type.

impl DpMatrix for DpMatrixSparse

fn target_length(&self) -> usize

fn profile_length(&self) -> usize

fn get_match(&self, target_idx: usize, profile_idx: usize) -> f32

fn set_match(&mut self, target_idx: usize, profile_idx: usize, value: f32)

fn get_insert(&self, target_idx: usize, profile_idx: usize) -> f32

fn set_insert(&mut self, target_idx: usize, profile_idx: usize, value: f32)

fn get_delete(&self, target_idx: usize, profile_idx: usize) -> f32

fn set_delete(&mut self, target_idx: usize, profile_idx: usize, value: f32)

fn get_special(&self, target_idx: usize, special_idx: usize) -> f32

fn set_special(&mut self, target_idx: usize, special_idx: usize, value: f32)

fn dump(&self, out: &mut impl Write) -> Result<()>