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ConsensusFeature

koth_ms::lfq::consensus

Struct ConsensusFeature 

Source 
pub struct ConsensusFeature {
Show 14 fields
    pub ref_mz: f64,
    pub ref_rt: f64,
    pub ref_im: f64,
    pub charge: u8,
    pub theoretical_pattern: Vec<f64>,
    pub neutral_mass: f64,
    pub seed_combined_score: f64,
    pub seed_run_idx: usize,
    pub n_contributing_runs: usize,
    pub per_run_feature: Vec<Option<u32>>,
    pub members: Vec<(usize, u32)>,
    pub seed_feature_idx: u32,
    pub group_score: f64,
    pub group_qvalue: f64,

}
Expand description

One row in the multi-run consensus feature list.

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§ref_mz: f64

Monoisotopic m/z in reference-run space.

§ref_rt: f64

Retention time apex in reference-run space (minutes).

§ref_im: f64

Ion mobility apex in reference-run space (0.0 if not available).

§charge: u8§theoretical_pattern: Vec<f64>

Theoretical averagine isotope pattern (normalised), from the seed’s ScoredFeature.

§neutral_mass: f64

Neutral monoisotopic mass in reference space.

§seed_combined_score: f64

combined_score (isotope × chromato cosine) of the seed feature.

§seed_run_idx: usize

Index into the runs slice that supplied the seed.

§n_contributing_runs: usize

How many runs contributed at least one feature to this group.

§per_run_feature: Vec<Option<u32>>

For each run index in runs, the per-run feature index that joined this group (highest combined_score among that run’s contributing features) or None if the run contributed nothing. Length = n_runs.

Used by lfq::quantify to take the per-run feature’s total_intensity() directly for contributing runs, falling back to XIC re-integration only for runs that did not contribute (MBR transfer).

§members: Vec<(usize, u32)>

Every original member, including alternatives to the primary per run.

§seed_feature_idx: u32

Original feature index of the seed in its source run. Search-guided candidates have no feature seed and use u32::MAX; their ID provenance is carried separately by SearchGuidance.

§group_score: f64

Continuous cross-run evidence; the detector score is not a probability.

§group_qvalue: f64

Experimental permuted-RT group q-value, separate from cell confidence.

Trait Implementations§

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impl Clone for ConsensusFeature

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fn clone(&self) -> Self

Returns a duplicate of the value. Read more
1.0.0 (const: unstable) · Source§

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source. Read more
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impl Debug for ConsensusFeature

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fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter. Read more

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