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Hill

koth_core::models

Struct Hill 

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pub struct Hill {
Show 21 fields
    pub hill_id: u64,
    pub mz: f64,
    pub mz_std: f64,
    pub mz_se: f64,
    pub rt: f64,
    pub rt_start: f64,
    pub rt_end: f64,
    pub rt_width: f64,
    pub im: f64,
    pub im_std: f64,
    pub scan_start: usize,
    pub scan_apex: usize,
    pub scan_end: usize,
    pub n_scans: usize,
    pub skipped_scans: usize,
    pub intensity_sum: f64,
    pub intensity_max: f64,
    pub hill_score: f64,
    pub intensity_profile: Arc<[f32]>,
    pub isolation_window: Option<IsolationWindow>,
    pub faims_cv: Option<f32>,

}
Expand description

A finalized chromatographic hill (elution peak for a single m/z trace).

Column names match the Python zenith_feature_finder hills.tsv output exactly.

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§hill_id: u64

Stable identifier assigned at the end of hill detection. Matches the hill_id column in hills.{tsv,parquet} and the entries in the hill_ids column of features.{tsv,parquet}. IDs are unique within a single hills file (MS1 and MS2 each have their own ID space).

§mz: f64§mz_std: f64§mz_se: f64

Standard error of the intensity-weighted m/z estimate (Kish-effective sample size). Zero for hills with <2 real peaks. Written to the hills output as a per-hill m/z-confidence diagnostic.

§rt: f64§rt_start: f64§rt_end: f64§rt_width: f64§im: f64§im_std: f64§scan_start: usize§scan_apex: usize§scan_end: usize§n_scans: usize§skipped_scans: usize§intensity_sum: f64§intensity_max: f64§hill_score: f64

Monotonicity-fraction shape score (0–1). 1.0 = perfectly hill-shaped.

§intensity_profile: Arc<[f32]>

Per-scan intensity profile (length == n_scans, zeros where gaps)

§isolation_window: Option<IsolationWindow>

Isolation window the hill was built from (None for MS1 hills, Some for MS2/DIA hills).

§faims_cv: Option<f32>

FAIMS compensation voltage shared by every scan in this hill. None for non-FAIMS data and for formats without FAIMS metadata.

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impl Hill

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pub fn intensity_at_scan(&self, scan_idx: usize) -> f64

Intensity at a specific absolute scan index, or 0.0 if out of range.

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pub fn overlaps(&self, other: &Hill) -> bool

Returns true if this hill’s scan range overlaps with another.

Trait Implementations§

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impl Clone for Hill

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fn clone(&self) -> Self

Returns a duplicate of the value. Read more
1.0.0 (const: unstable) · Source§

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source. Read more
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impl Debug for Hill

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fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter. Read more

Auto Trait Implementations§

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impl Freeze for Hill

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impl RefUnwindSafe for Hill

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impl Send for Hill

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impl Sync for Hill

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impl Unpin for Hill

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impl UnsafeUnpin for Hill

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impl UnwindSafe for Hill

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impl<T> Any for T
where T: 'static + ?Sized,

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fn type_id(&self) -> TypeId

Gets the TypeId of self. Read more
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impl<T> Borrow<T> for T
where T: ?Sized,

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fn borrow(&self) -> &T

Immutably borrows from an owned value. Read more
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impl<T> BorrowMut<T> for T
where T: ?Sized,

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fn borrow_mut(&mut self) -> &mut T

Mutably borrows from an owned value. Read more
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impl<T> CloneToUninit for T
where T: Clone,

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unsafe fn clone_to_uninit(&self, dest: *mut u8)

🔬This is a nightly-only experimental API. (clone_to_uninit)
Performs copy-assignment from self to dest. Read more
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impl<T> From<T> for T

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fn from(t: T) -> T

Returns the argument unchanged.

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impl<T, U> Into<U> for T
where U: From<T>,

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fn into(self) -> U

Calls U::from(self).

That is, this conversion is whatever the implementation of From<T> for U chooses to do.

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impl<T> IntoEither for T

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fn into_either(self, into_left: bool) -> Either<Self, Self> ⓘ

Converts self into a Left variant of Either<Self, Self> if into_left is true. Converts self into a Right variant of Either<Self, Self> otherwise. Read more
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fn into_either_with<F>(self, into_left: F) -> Either<Self, Self> ⓘ
where F: FnOnce(&Self) -> bool,

Converts self into a Left variant of Either<Self, Self> if into_left(&self) returns true. Converts self into a Right variant of Either<Self, Self> otherwise. Read more
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impl<T> Pointable for T

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const ALIGN: usize

The alignment of pointer.
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type Init = T

The type for initializers.
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unsafe fn init(init: <T as Pointable>::Init) -> usize

Initializes a with the given initializer. Read more
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unsafe fn deref<'a>(ptr: usize) -> &'a T

Dereferences the given pointer. Read more
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unsafe fn deref_mut<'a>(ptr: usize) -> &'a mut T

Mutably dereferences the given pointer. Read more
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unsafe fn drop(ptr: usize)

Drops the object pointed to by the given pointer. Read more
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impl<T> ToOwned for T
where T: Clone,

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type Owned = T

The resulting type after obtaining ownership.
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fn to_owned(&self) -> T

Creates owned data from borrowed data, usually by cloning. Read more
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fn clone_into(&self, target: &mut T)

Uses borrowed data to replace owned data, usually by cloning. Read more
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impl<T, U> TryFrom<U> for T
where U: Into<T>,

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type Error = !

The type returned in the event of a conversion error.
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fn try_from(value: U) -> Result<T, !>

Performs the conversion.
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impl<T, U> TryInto<U> for T
where U: TryFrom<T>,

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type Error = <U as TryFrom<T>>::Error

The type returned in the event of a conversion error.
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fn try_into(self) -> Result<U, <U as TryFrom<T>>::Error>

Performs the conversion.
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impl<V, T> VZip<V> for T
where V: MultiLane<T>,

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fn vzip(self) -> V