DenseAccumulator

kmers_rs

Struct DenseAccumulator 

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pub struct DenseAccumulator { /* private fields */ }
Expand description

Accumulate k-mer frequencies for small to medium k.

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impl DenseAccumulator

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pub fn new(k: usize) -> DenseAccumulator

Construct a new accumulator.

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pub fn add<S>(&mut self, seq: &S)
where S: AsRef<[u8]>,

Add k-mers from the forward strand of the given sequence.

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pub fn add_both<S>(&mut self, seq: &S)
where S: AsRef<[u8]>,

Add k-mers from both strands of the given sequence.

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pub fn kmer_frequencies(&self) -> impl Iterator<Item = (Kmer, usize)> + '_

Get a k-mer frequency iterator over the accumulator.

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