Struct ReportRow 

pub struct ReportRow { /* private fields */ }

A single row from a kraken2 report file.

Each row represents one taxon and includes classification counts, the taxonomic rank, and the taxon name. The depth field is derived from the leading whitespace indentation in the original report and encodes the position in the taxonomy tree.

For extended reports (with minimizer data), minimizer_count and distinct_minimizer_count are Some; for standard reports they are None.

Implementations

impl ReportRow

pub fn percentage(&self) -> f64

Percentage of fragments rooted at this taxon’s clade.

pub fn clade_count(&self) -> u64

Number of fragments in the clade rooted at this taxon.

pub fn direct_count(&self) -> u64

Number of fragments assigned directly to this taxon.

pub fn minimizer_count(&self) -> Option<u64>

Number of minimizers in the clade (extended reports only).

pub fn distinct_minimizer_count(&self) -> Option<u64>

Number of distinct minimizers in the clade (extended reports only).

pub fn taxonomic_rank(&self) -> TaxonomicRank

The taxonomic rank of this taxon.

pub fn taxon_id(&self) -> u64

NCBI taxonomy ID (0 for unclassified).

pub fn name(&self) -> &str

Scientific name of the taxon (trimmed, no leading indentation).

pub fn depth(&self) -> usize

Depth in the taxonomy tree, derived from leading indentation (spaces / 2).

Trait Implementations

impl Clone for ReportRow

fn clone(&self) -> ReportRow

Returns a duplicate of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Debug for ReportRow

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl<'de> Deserialize<'de> for ReportRow

fn deserialize<__D>(__deserializer: __D) -> Result<Self, __D::Error>

where __D: Deserializer<'de>,

Deserialize this value from the given Serde deserializer.

impl PartialEq for ReportRow

fn eq(&self, other: &ReportRow) -> bool

Tests for self and other values to be equal, and is used by ==.

fn ne(&self, other: &Rhs) -> bool

Tests for !=. The default implementation is almost always sufficient, and should not be overridden without very good reason.

impl Serialize for ReportRow

fn serialize<__S>(&self, __serializer: __S) -> Result<__S::Ok, __S::Error>

where __S: Serializer,

Serialize this value into the given Serde serializer.

impl StructuralPartialEq for ReportRow