Struct TruthAlignment 

pub struct TruthAlignment {
    pub contig: String,
    pub position: u32,
    pub is_forward: bool,
    pub haplotype: usize,
    pub fragment_length: u32,
    pub n_errors: usize,
}

Truth alignment data for a single read, used to encode position information into the read name.

In paired-end mode both reads of a pair carry the same fragment_length and haplotype.

Fields

contig: String

Reference contig name.

position: u32

1-based reference start position.

is_forward: bool

Whether the read is on the forward strand.

haplotype: usize

0-based haplotype index.

fragment_length: u32

Length in bases of the source fragment. When shorter than the read length, the remainder of the read is adapter (optionally N-padded).

n_errors: usize

Number of sequencing errors introduced.

Trait Implementations

impl Clone for TruthAlignment

fn clone(&self) -> TruthAlignment

Returns a duplicate of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Debug for TruthAlignment

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl PartialEq for TruthAlignment

fn eq(&self, other: &TruthAlignment) -> bool

Tests for self and other values to be equal, and is used by ==.

fn ne(&self, other: &Rhs) -> bool

Tests for !=. The default implementation is almost always sufficient, and should not be overridden without very good reason.

impl Eq for TruthAlignment

impl StructuralPartialEq for TruthAlignment