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MethylationVcfRecords

holodeck_lib::vcf::methylation

Struct MethylationVcfRecords 

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pub struct MethylationVcfRecords {
    pub has_mt_mb: bool,
    pub per_contig: HashMap<String, Vec<u8>>,
}
Expand description

Pre-parsed methylation VCF body: header MT/MB detection plus per-contig record bytes ready for read_contig_methylation.

Built once per VCF by parse_methylation_vcf. Reusing it across the per-contig loop avoids re-decompressing and re-scanning the full VCF on every contig — the cost previously paid by the now-removed load_contig_methylation_if_present.

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§has_mt_mb: bool

True iff the VCF header declared both MT and MB FORMAT fields.

§per_contig: HashMap<String, Vec<u8>>

Per-contig record lines (header excluded), each \n-terminated and concatenated, ready to pass as the byte slice to read_contig_methylation. Contigs absent from the file map to an empty Vec.

Trait Implementations§

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impl Debug for MethylationVcfRecords

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fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter. Read more
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impl Default for MethylationVcfRecords

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fn default() -> MethylationVcfRecords

Returns the “default value” for a type. Read more

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