Struct Transcript 

pub struct Transcript {
    pub biotype: Option<Vec<BioType>>,
    pub gene_name: Option<String>,
    pub gene_version: String,
    pub genome_builds: IndexMap<String, GenomeAlignment>,
    pub hgnc: Option<String>,
    pub id: String,
    pub partial: Option<u8>,
    pub protein: Option<String>,
    pub start_codon: Option<i32>,
    pub stop_codon: Option<i32>,
}

Fields

biotype: Option<Vec<BioType>>

Transcript biotype, e.g., vec![BioType::ProteinCoding] for BRCA1.

gene_name: Option<String>

Gene name, e.g., "BRCA1" for BRCA1.

gene_version: String

Gene version, NCBI gene ID for NCBI, e.g., "672" for BRCA1, ENSEMBL gene id, e.g., "ENSG00000012048" for BRCA1.

genome_builds: IndexMap<String, GenomeAlignment>

Alignments to the different genome builds.

hgnc: Option<String>

HGNC identifier, e.g. "1100" for BRCA1 which is HGNC:1100.

id: String

Identifier of the transcript, same as key in transcripts, e.g., "NM_007294.3" for BRCA1.

partial: Option<u8>

When the transcript does not match the primary assembly ("NC_") perfectly / the assembly itself is wrong/partial

protein: Option<String>

Identifier of corresponding protein, e.g., "NP_009225.1" for "NM_007294.3" of BRCA1.

start_codon: Option<i32>

0-based position of codon of transcript, e.g., 232 for "NM_007294.3" of BRCA1.

stop_codon: Option<i32>

End position of stop codon of transcript, e.g., 5824 for "NM_007294.3" of BRCA1.

Trait Implementations

impl Clone for Transcript

fn clone(&self) -> Transcript

Returns a duplicate of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Debug for Transcript

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl<'de> Deserialize<'de> for Transcript

fn deserialize<__D>(__deserializer: __D) -> Result<Self, __D::Error>

where __D: Deserializer<'de>,

Deserialize this value from the given Serde deserializer.

impl Serialize for Transcript

fn serialize<__S>(&self, __serializer: __S) -> Result<__S::Ok, __S::Error>

where __S: Serializer,

Serialize this value into the given Serde serializer.