Struct GenomePosition 

pub struct GenomePosition {
    pub reference: char,
    pub is_deleted: bool,
    pub is_deleted_minor: bool,
    pub deleted_evidence: Vec<Evidence>,
    pub alts: Vec<Alt>,
    pub genome_idx: i64,
    pub genes: Vec<String>,
}

Struct to hold the information of a genome position

Fields

reference: char

Nucleotide at this position

is_deleted: bool

Whether this position has been deleted

is_deleted_minor: bool

Whether this position has been deleted in a minor allele

deleted_evidence: Vec<Evidence>

Added for evidence of a deletion which didn’t start at this position but affects it Includes evidence of minor deletions for simplicity

alts: Vec<Alt>

Used to store calls from VCF

genome_idx: i64

1-indexed genome index

genes: Vec<String>

Names of genes present at this position

Trait Implementations

impl Clone for GenomePosition

fn clone(&self) -> GenomePosition

Returns a duplicate of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Debug for GenomePosition

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl DerefToPyAny for GenomePosition

impl Eq for GenomePosition

impl<'py> IntoPyObject<'py> for GenomePosition

type Target = GenomePosition

The Python output type

type Output = Bound<'py, <GenomePosition as IntoPyObject<'py>>::Target>

The smart pointer type to use.

type Error = PyErr

The type returned in the event of a conversion error.

fn into_pyobject( self, py: Python<'py>, ) -> Result<<Self as IntoPyObject<'_>>::Output, <Self as IntoPyObject<'_>>::Error>

Performs the conversion.

impl PartialEq for GenomePosition

fn eq(&self, other: &GenomePosition) -> bool

Tests for self and other values to be equal, and is used by ==.

fn ne(&self, other: &Rhs) -> bool

Tests for !=. The default implementation is almost always sufficient, and should not be overridden without very good reason.

impl PyClass for GenomePosition

type Frozen = False

Whether the pyclass is frozen.

impl PyClassImpl for GenomePosition

const IS_BASETYPE: bool = false

#[pyclass(subclass)]

const IS_SUBCLASS: bool = false

#[pyclass(extends=…)]

const IS_MAPPING: bool = false

#[pyclass(mapping)]

const IS_SEQUENCE: bool = false

#[pyclass(sequence)]

const IS_IMMUTABLE_TYPE: bool = false

#[pyclass(immutable_type)]

type BaseType = PyAny

Base class

type ThreadChecker = SendablePyClass<GenomePosition>

This handles following two situations:

type PyClassMutability = <<PyAny as PyClassBaseType>::PyClassMutability as PyClassMutability>::MutableChild

Immutable or mutable

type Dict = PyClassDummySlot

Specify this class has #[pyclass(dict)] or not.

type WeakRef = PyClassDummySlot

Specify this class has #[pyclass(weakref)] or not.

type BaseNativeType = PyAny

The closest native ancestor. This is PyAny by default, and when you declare #[pyclass(extends=PyDict)], it’s PyDict.

fn items_iter() -> PyClassItemsIter

fn doc(py: Python<'_>) -> PyResult<&'static CStr>

Rendered class doc

fn lazy_type_object() -> &'static LazyTypeObject<Self>

fn dict_offset() -> Option<isize>

fn weaklist_offset() -> Option<isize>

impl<'a, 'py> PyFunctionArgument<'a, 'py, false> for &'a GenomePosition

type Holder = Option<PyRef<'py, GenomePosition>>

fn extract( obj: &'a Bound<'py, PyAny>, holder: &'a mut Self::Holder, ) -> PyResult<Self>

impl<'a, 'py> PyFunctionArgument<'a, 'py, false> for &'a mut GenomePosition

type Holder = Option<PyRefMut<'py, GenomePosition>>

fn extract( obj: &'a Bound<'py, PyAny>, holder: &'a mut Self::Holder, ) -> PyResult<Self>

impl PyTypeInfo for GenomePosition

const NAME: &'static str = "GenomePosition"

Class name.

const MODULE: Option<&'static str> = ::core::option::Option::None

Module name, if any.

fn type_object_raw(py: Python<'_>) -> *mut PyTypeObject

Returns the PyTypeObject instance for this type.

fn type_object(py: Python<'_>) -> Bound<'_, PyType>

Returns the safe abstraction over the type object.

fn is_type_of(object: &Bound<'_, PyAny>) -> bool

Checks if object is an instance of this type or a subclass of this type.

fn is_exact_type_of(object: &Bound<'_, PyAny>) -> bool

Checks if object is an instance of this type.

impl StructuralPartialEq for GenomePosition