Enum OOBOption 

pub enum OOBOption {
    Truncate,
    Skip,
}

Options used for dealing with out-of-boundary features Options for handling out-of-bounds (OOB) genomic coordinates.

This enumeration defines strategies for dealing with genomic features or intervals that extend beyond the boundaries of a reference sequence, such as a chromosome or contig. It’s commonly used in genomic data processing to determine how to handle intervals when extracting sequences or extending features beyond reference sequence limits.

Variants

• Truncate: Adjust out-of-bounds intervals to fit within the available sequence range. This can result in shorter sequences than originally specified but ensures that all returned sequences are valid within the context of the reference.
• Skip: Ignore any intervals that extend beyond the boundaries of the reference sequence. This can result in some data being omitted from the results but maintains the original size and integrity of the remaining sequences.

Examples

Choosing to truncate sequences that extend beyond the reference:

let oob_option = OOBOption::Truncate;

Choosing to skip any features that extend beyond the reference boundaries:

let oob_option = OOBOption::Skip;

These handling strategies are vital for ensuring that genomic data analyses remain robust and adaptable to varying data qualities and reference sequence constraints.

Variants

Truncate

Skip

Trait Implementations

impl Clone for OOBOption

fn clone(&self) -> OOBOption

Returns a duplicate of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl PartialEq for OOBOption

fn eq(&self, other: &OOBOption) -> bool

Tests for self and other values to be equal, and is used by ==.

fn ne(&self, other: &Rhs) -> bool

Tests for !=. The default implementation is almost always sufficient, and should not be overridden without very good reason.

impl Copy for OOBOption

impl Eq for OOBOption

impl StructuralPartialEq for OOBOption