Struct Parameters 

pub struct Parameters {
    pub match_value: i32,
    pub mismatch_penalty: i32,
    pub gap_open_penalty: i32,
    pub gap_extend_penalty: i32,
}

The parameters used by Smith-Waterman alignment.

Fields

match_value: i32

Match value.

Must be >= 0.

mismatch_penalty: i32

Mismatch penalty.

Must be <= 0.

gap_open_penalty: i32

Gap open penalty.

Must be <= 0.

gap_extend_penalty: i32

Gap extension penalty.

Must be <= 0.

Implementations

impl Parameters

pub fn new( match_value: i32, mismatch_penalty: i32, gap_open_penalty: i32, gap_extend_penalty: i32, ) -> Self

Create a new Parameters.

The values are not validated by this call. Instead, the alignment algorithms will validate them before use.

pub fn validate(self) -> Result<()>

Validate the parameter values.

Trait Implementations

impl Clone for Parameters

fn clone(&self) -> Parameters

Returns a duplicate of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Debug for Parameters

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl Copy for Parameters