Enum OverhangStrategy 

#[repr(i8)]
pub enum OverhangStrategy {
    SoftClip = 9,
    InDel = 10,
    LeadingInDel = 11,
    Ignore = 12,
}

How overhangs should be treated during Smith-Waterman alignment.

Variants

SoftClip = 9

Add softclips for the overhangs.

InDel = 10

Treat the overhangs as proper insertions/deletions.

LeadingInDel = 11

Treat the overhangs as proper insertions/deletions for leading (but not trailing) overhangs.

This is useful e.g. when we want to merge dangling tails in an assembly graph: because we don’t expect the dangling tail to reach the end of the reference path we are okay ignoring trailing deletions - but leading indels are still very much relevant.

Ignore = 12

Just ignore the overhangs.

Trait Implementations

impl Clone for OverhangStrategy

fn clone(&self) -> OverhangStrategy

Returns a duplicate of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Debug for OverhangStrategy

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl Copy for OverhangStrategy