Struct StringNetworkArgs 

pub struct StringNetworkArgs {
    pub identifiers: Vec<String>,
    pub species: usize,
    pub required_score: Option<f64>,
    pub network_type: StringNetworkType,
    pub add_nodes: Option<usize>,
    pub show_query_node_labels: bool,
    pub caller_identity: String,
}

Retrieves the network interactions for your input protein(s) in various text based formats

Fields

identifiers: Vec<String>

List of genes to retrieve network for

species: usize

Species to retrieve network for (NCBI taxonomy ID)

required_score: Option<f64>

threshold of significance to include a interaction, a number between 0 and 1000 (default depends on the network)

network_type: StringNetworkType

The type of network to retrieve

add_nodes: Option<usize>

adds a number of proteins with to the network based on their confidence score

show_query_node_labels: bool

when available use submitted names in the preferredName column when true

caller_identity: String

identifier of the caller to provide to the server

Implementations

impl StringNetworkArgs

pub fn builder() -> StringNetworkArgsBuilder

Create an instance of StringNetworkArgs using the builder syntax

impl StringNetworkArgs

pub fn build_post(&self) -> Value

Trait Implementations

impl Args for StringNetworkArgs

fn group_id() -> Option<Id>

Report the ArgGroup::id for this set of arguments

fn augment_args<'b>(__clap_app: Command) -> Command

Append to Command so it can instantiate Self via FromArgMatches::from_arg_matches_mut

fn augment_args_for_update<'b>(__clap_app: Command) -> Command

Append to Command so it can instantiate self via FromArgMatches::update_from_arg_matches_mut

impl Clone for StringNetworkArgs

fn clone(&self) -> StringNetworkArgs

Returns a duplicate of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl CommandFactory for StringNetworkArgs

fn command<'b>() -> Command

Build a Command that can instantiate Self.

fn command_for_update<'b>() -> Command

Build a Command that can update self.

impl Debug for StringNetworkArgs

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl FromArgMatches for StringNetworkArgs

fn from_arg_matches(__clap_arg_matches: &ArgMatches) -> Result<Self, Error>

Instantiate Self from ArgMatches, parsing the arguments as needed.

fn from_arg_matches_mut( __clap_arg_matches: &mut ArgMatches, ) -> Result<Self, Error>

Instantiate Self from ArgMatches, parsing the arguments as needed.

fn update_from_arg_matches( &mut self, __clap_arg_matches: &ArgMatches, ) -> Result<(), Error>

Assign values from ArgMatches to self.

fn update_from_arg_matches_mut( &mut self, __clap_arg_matches: &mut ArgMatches, ) -> Result<(), Error>

Assign values from ArgMatches to self.

impl Parser for StringNetworkArgs

fn parse() -> Self

Parse from std::env::args_os(), exit on error.

fn try_parse() -> Result<Self, Error>

Parse from std::env::args_os(), return Err on error.

fn parse_from<I, T>(itr: I) -> Self

where I: IntoIterator<Item = T>, T: Into<OsString> + Clone,

Parse from iterator, exit on error.

fn try_parse_from<I, T>(itr: I) -> Result<Self, Error>

where I: IntoIterator<Item = T>, T: Into<OsString> + Clone,

Parse from iterator, return Err on error.

fn update_from<I, T>(&mut self, itr: I)

where I: IntoIterator<Item = T>, T: Into<OsString> + Clone,

Update from iterator, exit on error.

fn try_update_from<I, T>(&mut self, itr: I) -> Result<(), Error>

where I: IntoIterator<Item = T>, T: Into<OsString> + Clone,

Update from iterator, return Err on error.