Struct StringFunctionalEnrichmentArgs 

pub struct StringFunctionalEnrichmentArgs {
    pub identifiers: Vec<String>,
    pub background: Option<Vec<String>>,
    pub species: usize,
    pub caller_identity: String,
}

Performs the enrichment analysis of your set of proteins for the Gene Ontology, KEGG pathways, UniProt Keywords, PubMed publications, Pfam, InterPro and SMART domains.

Fields

identifiers: Vec<String>

List of genes to retrieve network for

background: Option<Vec<String>>

Background list of genes to compare against (Only STRING identifiers are accepted) If not provided, the whole genome of the species is used

species: usize

Species to retrieve network for (NCBI taxonomy ID)

caller_identity: String

identifier of the caller to provide to the server

Implementations

impl StringFunctionalEnrichmentArgs

pub fn builder() -> StringFunctionalEnrichmentArgsBuilder

Create an instance of StringFunctionalEnrichmentArgs using the builder syntax

impl StringFunctionalEnrichmentArgs

pub fn build_post(&self) -> Value

Trait Implementations

impl Args for StringFunctionalEnrichmentArgs

fn group_id() -> Option<Id>

Report the ArgGroup::id for this set of arguments

fn augment_args<'b>(__clap_app: Command) -> Command

Append to Command so it can instantiate Self via FromArgMatches::from_arg_matches_mut

fn augment_args_for_update<'b>(__clap_app: Command) -> Command

Append to Command so it can instantiate self via FromArgMatches::update_from_arg_matches_mut

impl Clone for StringFunctionalEnrichmentArgs

fn clone(&self) -> StringFunctionalEnrichmentArgs

Returns a duplicate of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl CommandFactory for StringFunctionalEnrichmentArgs

fn command<'b>() -> Command

Build a Command that can instantiate Self.

fn command_for_update<'b>() -> Command

Build a Command that can update self.

impl Debug for StringFunctionalEnrichmentArgs

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl FromArgMatches for StringFunctionalEnrichmentArgs

fn from_arg_matches(__clap_arg_matches: &ArgMatches) -> Result<Self, Error>

Instantiate Self from ArgMatches, parsing the arguments as needed.

fn from_arg_matches_mut( __clap_arg_matches: &mut ArgMatches, ) -> Result<Self, Error>

Instantiate Self from ArgMatches, parsing the arguments as needed.

fn update_from_arg_matches( &mut self, __clap_arg_matches: &ArgMatches, ) -> Result<(), Error>

Assign values from ArgMatches to self.

fn update_from_arg_matches_mut( &mut self, __clap_arg_matches: &mut ArgMatches, ) -> Result<(), Error>

Assign values from ArgMatches to self.

impl Parser for StringFunctionalEnrichmentArgs

fn parse() -> Self

Parse from std::env::args_os(), exit on error.

fn try_parse() -> Result<Self, Error>

Parse from std::env::args_os(), return Err on error.

fn parse_from<I, T>(itr: I) -> Self

where I: IntoIterator<Item = T>, T: Into<OsString> + Clone,

Parse from iterator, exit on error.

fn try_parse_from<I, T>(itr: I) -> Result<Self, Error>

where I: IntoIterator<Item = T>, T: Into<OsString> + Clone,

Parse from iterator, return Err on error.

fn update_from<I, T>(&mut self, itr: I)

where I: IntoIterator<Item = T>, T: Into<OsString> + Clone,

Update from iterator, exit on error.

fn try_update_from<I, T>(&mut self, itr: I) -> Result<(), Error>

where I: IntoIterator<Item = T>, T: Into<OsString> + Clone,

Update from iterator, return Err on error.