Struct CompareGFF

pub struct CompareGFF { /* private fields */ }

Implementations

impl CompareGFF

pub fn new() -> Self

Creates a new, blank CompareGFF.

pub fn record_issues(&mut self, do_record: bool)

Changes the option to record issues in the result.

pub fn flexible_ids(&mut self, use_flexible_ids: bool)

Changes the option to create new IDs in case of duplicates.

pub fn new_from_files<S: Into<String>>( filename1: S, filename2: S, ) -> Result<Self, Box<dyn Error>>

Creates a new CompareGFF with two files.

pub fn load_gff<S: Into<String>>( &mut self, filename: S, data_set: u8, ) -> Result<(), Box<dyn Error>>

pub fn diff(&self) -> Result<Value, Box<dyn Error>>

Generates the diff between the two loaded files.

pub fn sort_comparison(result: &mut Value)

Sorts a comparison JSON. Potentially slow. Used in tests.

pub fn diff_apollo(&self) -> Result<Value, Box<dyn Error>>

pub fn write_data1(&self, file: Box<dyn Write>) -> Result<(), Box<dyn Error>>

pub fn apply_diff( &mut self, diff: &Value, ) -> Result<&HashMap<String, Record>, Box<dyn Error>>

Applies the given diff to the data loaded into the gff 1 slot.