Struct GenomicSchema 

pub struct GenomicSchema {
    pub format: FileFormat,
    pub columns: Vec<ColumnDef>,
    /* private fields */
}

Schema for a genomic data format

Describes the columns/fields available in a format and their types.

Fields

format: FileFormat

The file format this schema describes

columns: Vec<ColumnDef>

Columns in this format

Implementations

impl GenomicSchema

pub fn new(format: FileFormat, columns: Vec<ColumnDef>) -> Self

Create a new schema

pub fn column(&self, name: &str) -> Option<&ColumnDef>

Get column by name

pub fn has_column(&self, name: &str) -> bool

Check if column exists

pub fn column_names(&self) -> Vec<&str>

Get all column names

impl GenomicSchema

pub fn vcf() -> Self

VCF format schema

pub fn bam() -> Self

BAM format schema

pub fn bed() -> Self

BED format schema

pub fn fastq() -> Self

FASTQ format schema

Trait Implementations

impl Clone for GenomicSchema

fn clone(&self) -> GenomicSchema

Returns a duplicate of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Debug for GenomicSchema

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.