Struct BlockGroup 

pub struct BlockGroup {
    pub id: HashId,
    pub collection_name: String,
    pub sample_name: Option<String>,
    pub name: String,
    pub created_on: i64,
}

Fields

id: HashId

collection_name: String

sample_name: Option<String>

name: String

created_on: i64

Implementations

impl BlockGroup

pub fn create( conn: &GraphConnection, collection_name: &str, sample_name: Option<&str>, name: &str, ) -> BlockGroup

pub fn delete( conn: &GraphConnection, collection_name: &str, sample_name: Option<&str>, name: &str, )

pub fn get_by_id(conn: &GraphConnection, id: &HashId) -> BlockGroup

pub fn duplicate(&self, conn: &GraphConnection, target_block_group_id: &HashId)

pub fn get_or_create_sample_block_group( conn: &GraphConnection, collection_name: &str, sample_name: &str, group_name: &str, parent_sample: Option<&str>, ) -> Result<HashId, QueryError>

pub fn get_id( collection_name: &str, sample_name: Option<&str>, group_name: &str, ) -> HashId

pub fn get_graph(conn: &GraphConnection, block_group_id: &HashId) -> GenGraph

pub fn prune_graph(graph: &mut GenGraph)

pub fn get_all_sequences( conn: &GraphConnection, block_group_id: &HashId, _prune: bool, ) -> HashSet<String>

pub fn add_accession( conn: &GraphConnection, path: &Path, name: &str, start: i64, end: i64, cache: &mut PathCache<'_>, ) -> Accession

pub fn insert_changes( conn: &GraphConnection, changes: &[PathChange], cache: &mut PathCache<'_>, modify_blockgroup: bool, ) -> Result<(), ChangeError>

pub fn insert_change( conn: &GraphConnection, change: &PathChange, tree: &IntervalTree<i64, NodeIntervalBlock>, ) -> Result<(), ChangeError>

pub fn intervaltree_for( conn: &GraphConnection, block_group_id: &HashId, remove_ambiguous_positions: bool, ) -> IntervalTree<i64, NodeIntervalBlock>

pub fn get_current_path(conn: &GraphConnection, block_group_id: &HashId) -> Path

pub fn get_path_by_name( conn: &GraphConnection, block_group_id: &HashId, path_name: &str, ) -> Option<Path>

pub fn derive_subgraph( conn: &GraphConnection, collection_name: &str, child_sample_name: &str, source_block_group_id: &HashId, start_block: &NodeIntervalBlock, end_block: &NodeIntervalBlock, start_node_coordinate: i64, end_node_coordinate: i64, target_block_group_id: &HashId, ) -> HashMap<HashId, HashId>

Trait Implementations

impl<'a> Capnp<'a> for BlockGroup

type Builder = Builder<'a>

type Reader = Reader<'a>

fn write_capnp(&self, builder: &mut Self::Builder)

fn read_capnp(reader: Self::Reader) -> Self

impl Clone for BlockGroup

fn clone(&self) -> BlockGroup

Returns a duplicate of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Debug for BlockGroup

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl<'de> Deserialize<'de> for BlockGroup

fn deserialize<__D>(__deserializer: __D) -> Result<Self, __D::Error>

where __D: Deserializer<'de>,

Deserialize this value from the given Serde deserializer.

impl Hash for BlockGroup

fn hash<__H: Hasher>(&self, state: &mut __H)

Feeds this value into the given Hasher.

fn hash_slice<H>(data: &[Self], state: &mut H)

where H: Hasher, Self: Sized,

Feeds a slice of this type into the given Hasher.

impl PartialEq for BlockGroup

fn eq(&self, other: &BlockGroup) -> bool

Tests for self and other values to be equal, and is used by ==.

fn ne(&self, other: &Rhs) -> bool

Tests for !=. The default implementation is almost always sufficient, and should not be overridden without very good reason.

impl Query for BlockGroup

const TABLE_NAME: &'static str = "block_groups"

type Model = BlockGroup

fn process_row(row: &Row<'_>) -> Self::Model

const PRIMARY_KEY: &'static str = "id"

fn query( conn: &Connection, query: &str, params: impl Params, ) -> Vec<Self::Model>

fn get( conn: &Connection, query: &str, params: impl Params, ) -> Result<Self::Model>

fn get_by_id<'a, T>(conn: &Connection, id: &'a T) -> Option<Self::Model>

where T: Clone + 'a, Value: From<T>,

fn query_by_ids<'a, I: ?Sized, T>( conn: &Connection, ids: &'a I, ) -> Vec<Self::Model>

where &'a I: IntoIterator<Item = &'a T>, T: Clone + 'a, Value: From<T>,

fn delete_by_ids<'a, I: ?Sized, T>( conn: &Connection, ids: &'a I, ) -> Vec<Self::Model>

where &'a I: IntoIterator<Item = &'a T>, T: Clone + 'a, Value: From<T>,

fn table_name() -> &'static str

fn all(conn: &Connection) -> Vec<Self::Model>

fn all_with_limit(conn: &Connection, limit: usize) -> Vec<Self::Model>

impl Serialize for BlockGroup

fn serialize<__S>(&self, __serializer: __S) -> Result<__S::Ok, __S::Error>

where __S: Serializer,

Serialize this value into the given Serde serializer.

impl Eq for BlockGroup

impl StructuralPartialEq for BlockGroup